Literature DB >> 10592170

GenBank.

D A Benson1, I Karsch-Mizrachi, D J Lipman, J Ostell, B A Rapp, D L Wheeler.   

Abstract

The GenBank((R))sequence database incorporates publicly available DNA sequences of >55 000 different organisms, primarily through direct submission of sequence data from individual laboratories and large-scale sequencing projects. Most submissions are made using the BankIt (Web) or Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Data exchange with the EMBL Data Library and the DNA Data Bank of Japan helps ensure comprehensive worldwide coverage. GenBank data is accessible through NCBI's integrated retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping and protein structure information, plus the biomedical literature via PubMed. Sequence similarity searching is provided by the BLAST family of programs. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. NCBI also offers a wide range of WWW retrieval and analysis services based on GenBank data. The GenBank database and related resources are freely accessible via the NCBI home page at http://www.ncbi.nlm.nih.gov

Mesh:

Substances:

Year:  2000        PMID: 10592170      PMCID: PMC102453          DOI: 10.1093/nar/28.1.15

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  12 in total

1.  MMDB: 3D structure data in Entrez.

Authors:  Y Wang; K J Addess; L Geer; T Madej; A Marchler-Bauer; D Zimmerman; S H Bryant
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Database resources of the National Center for Biotechnology Information.

Authors:  D L Wheeler; C Chappey; A E Lash; D D Leipe; T L Madden; G D Schuler; T A Tatusova; B A Rapp
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  DNA Data Bank of Japan dealing with large-scale data submission.

Authors:  H Sugawara; S Miyazaki; T Gojobori; Y Tateno
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

4.  Protein sequence similarity searches using patterns as seeds.

Authors:  Z Zhang; A A Schäffer; W Miller; T L Madden; D J Lipman; E V Koonin; S F Altschul
Journal:  Nucleic Acids Res       Date:  1998-09-01       Impact factor: 16.971

5.  GenBank.

Authors:  D A Benson; M S Boguski; D J Lipman; J Ostell; B F Ouellette
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

Review 6.  Pieces of the puzzle: expressed sequence tags and the catalog of human genes.

Authors:  G D Schuler
Journal:  J Mol Med (Berl)       Date:  1997-10       Impact factor: 4.599

7.  Database divisions and homology search files: a guide for the perplexed.

Authors:  B F Ouellette; M S Boguski
Journal:  Genome Res       Date:  1997-10       Impact factor: 9.043

8.  dbEST--database for "expressed sequence tags".

Authors:  M S Boguski; T M Lowe; C M Tolstoshev
Journal:  Nat Genet       Date:  1993-08       Impact factor: 38.330

9.  An STS-based map of the human genome.

Authors:  T J Hudson; L D Stein; S S Gerety; J Ma; A B Castle; J Silva; D K Slonim; R Baptista; L Kruglyak; S H Xu; X Hu; A M Colbert; C Rosenberg; M P Reeve-Daly; S Rozen; L Hui; X Wu; C Vestergaard; K M Wilson; J S Bae; S Maitra; S Ganiatsas; C A Evans; M M DeAngelis; K A Ingalls; R W Nahf; L T Horton; M O Anderson; A J Collymore; W Ye; V Kouyoumjian; I S Zemsteva; J Tam; R Devine; D F Courtney; M T Renaud; H Nguyen; T J O'Connor; C Fizames; S Fauré; G Gyapay; C Dib; J Morissette; J B Orlin; B W Birren; N Goodman; J Weissenbach; T L Hawkins; S Foote; D C Page; E S Lander
Journal:  Science       Date:  1995-12-22       Impact factor: 47.728

10.  Genomic sequence sampling: a strategy for high resolution sequence-based physical mapping of complex genomes.

Authors:  M W Smith; A L Holmsen; Y H Wei; M Peterson; G A Evans
Journal:  Nat Genet       Date:  1994-05       Impact factor: 38.330

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  239 in total

1.  RHdb: the Radiation Hybrid database.

Authors:  P Rodriguez-Tomé; P Lijnzaad
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  The MetaFam Server: a comprehensive protein family resource.

Authors:  K A Silverstein; E Shoop; J E Johnson; A Kilian; J L Freeman; T M Kunau; I A Awad; M Mayer; E F Retzel
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  The PDB data uniformity project.

Authors:  T N Bhat; P Bourne; Z Feng; G Gilliland; S Jain; V Ravichandran; B Schneider; K Schneider; N Thanki; H Weissig; J Westbrook; H M Berman
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

4.  The RDP-II (Ribosomal Database Project).

Authors:  B L Maidak; J R Cole; T G Lilburn; C T Parker; P R Saxman; R J Farris; G M Garrity; G J Olsen; T M Schmidt; J M Tiedje
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

5.  SRPDB (Signal Recognition Particle Database).

Authors:  J Gorodkin; B Knudsen; C Zwieb; T Samuelsson
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

6.  The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments.

Authors:  J Murvai; K Vlahovicek; E Barta; S Pongor
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

7.  RefSeq and LocusLink: NCBI gene-centered resources.

Authors:  K D Pruitt; D R Maglott
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

8.  GOBASE: the organelle genome database.

Authors:  N Shimko; L Liu; B F Lang; G Burger
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

9.  tmRDB (tmRNA database).

Authors:  B Knudsen; J Wower; C Zwieb; J Gorodkin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

10.  ICB database: the gyrB database for identification and classification of bacteria.

Authors:  K Watanabe; J Nelson; S Harayama; H Kasai
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

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