Literature DB >> 11062545

Human immunodeficiency virus type 1 reverse transcriptase and protease mutation search engine for queries.

R W Shafer1, D R Jung, B J Betts.   

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Year:  2000        PMID： 11062545      PMCID： PMC2582445          DOI： 10.1038/81407

Source DB:  PubMed          Journal:  Nat Med        ISSN： 1078-8956            Impact factor:   53.440


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  11 in total

Review 1.  Comprehensive, comprehensible, distributed and intelligent databases: current status.

Authors:  D Frishman; K Heumann; A Lesk; H W Mewes
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

2.  GenBank.

Authors:  D A Benson; M S Boguski; D J Lipman; J Ostell; B F Ouellette; B A Rapp; D L Wheeler
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

3.  DNA Data Bank of Japan dealing with large-scale data submission.

Authors:  H Sugawara; S Miyazaki; T Gojobori; Y Tateno
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

4.  The EMBL Nucleotide Sequence Database.

Authors:  G Stoesser; M A Tuli; R Lopez; P Sterk
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

Review 5.  Informatics--genome and genetic databases.

Authors:  M Ashburner; N Goodman
Journal:  Curr Opin Genet Dev       Date:  1997-12       Impact factor: 5.578

6.  High-level resistance to 3'-azido-3'-deoxythimidine due to a deletion in the reverse transcriptase gene of human immunodeficiency virus type 1.

Authors:  T Imamichi; T Sinha; H Imamichi; Y M Zhang; J A Metcalf; J Falloon; H C Lane
Journal:  J Virol       Date:  2000-01       Impact factor: 5.103

7.  Guidelines for the use of antiretroviral agents in HIV-infected adults and adolescents, January 28, 2000 by the Panel on Clinical Practices for Treatment of HIV Infection.

Authors: 
Journal:  HIV Clin Trials       Date:  2000 Jul-Aug

8.  Maintaining the integrity of human immunodeficiency virus sequence databases.

Authors:  G H Learn; B T Korber; B Foley; B H Hahn; S M Wolinsky; J I Mullins
Journal:  J Virol       Date:  1996-08       Impact factor: 5.103

9.  Antiretroviral drug resistance testing in adult HIV-1 infection: recommendations of an International AIDS Society-USA Panel.

Authors:  M S Hirsch; F Brun-Vézinet; R T D'Aquila; S M Hammer; V A Johnson; D R Kuritzkes; C Loveday; J W Mellors; B Clotet; B Conway; L M Demeter; S Vella; D M Jacobsen; D D Richman
Journal:  JAMA       Date:  2000-05-10       Impact factor: 56.272

10.  A 6-basepair insert in the reverse transcriptase gene of human immunodeficiency virus type 1 confers resistance to multiple nucleoside inhibitors.

Authors:  M A Winters; K L Coolley; Y A Girard; D J Levee; H Hamdan; R W Shafer; D A Katzenstein; T C Merigan
Journal:  J Clin Invest       Date:  1998-11-15       Impact factor: 14.808
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  37 in total

1.  Diversity and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype.

Authors:  Niko Beerenwinkel; Barbara Schmidt; Hauke Walter; Rolf Kaiser; Thomas Lengauer; Daniel Hoffmann; Klaus Korn; Joachim Selbig
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

Review 2.  HIV sequence databases.

Authors:  Carla Kuiken; Bette Korber; Robert W Shafer
Journal:  AIDS Rev       Date:  2003 Jan-Mar       Impact factor: 2.500

3.  Evolution of resistance to drugs in HIV-1-infected patients failing antiretroviral therapy.

Authors:  Rami Kantor; Robert W Shafer; Stephen Follansbee; Jonathan Taylor; David Shilane; Leo Hurley; Dong-Phuong Nguyen; David Katzenstein; W Jeffrey Fessel
Journal:  AIDS       Date:  2004-07-23       Impact factor: 4.177

4.  Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID.

Authors:  Cassandra B Jabara; Corbin D Jones; Jeffrey Roach; Jeffrey A Anderson; Ronald Swanstrom
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-30       Impact factor: 11.205

5.  A Guide to HIV-1 Reverse Transcriptase and Protease Sequencing for Drug Resistance Studies.

Authors:  Robert W Shafer; Kathryn Dupnik; Mark A Winters; Susan H Eshleman
Journal:  HIV Seq Compend       Date:  2001

6.  The HIV-1 Non-subtype B Workgroup: an international collaboration for the collection and analysis of HIV-1 non-subtype B data.

Authors:  Rami Kantor; Robert W Shafer; David Katzenstein
Journal:  MedGenMed       Date:  2005-02-23

7.  Hepatitis B virus reverse transcriptase sequence variant database for sequence analysis and mutation discovery.

Authors:  Soo-Yon Rhee; Severine Margeridon-Thermet; Mindie H Nguyen; Tommy F Liu; Ron M Kagan; Bastian Beggel; Jens Verheyen; Rolf Kaiser; Robert W Shafer
Journal:  Antiviral Res       Date:  2010-09-25       Impact factor: 5.970

8.  HIV-1 pol mutation frequency by subtype and treatment experience: extension of the HIVseq program to seven non-B subtypes.

Authors:  Soo-Yon Rhee; Rami Kantor; David A Katzenstein; Ricardo Camacho; Lynn Morris; Sunee Sirivichayakul; Louise Jorgensen; Luis F Brigido; Jonathan M Schapiro; Robert W Shafer
Journal:  AIDS       Date:  2006-03-21       Impact factor: 4.177

9.  The Genetic Basis of HIV-1 Resistance to Reverse Transcriptase and Protease Inhibitors.

Authors:  Robert W Shafer; Rami Kantor; Matthew J Gonzales
Journal:  AIDS Rev       Date:  2000       Impact factor: 2.500

10.  Functional correlates of insertion mutations in the protease gene of human immunodeficiency virus type 1 isolates from patients.

Authors:  E Y Kim; M A Winters; R M Kagan; T C Merigan
Journal:  J Virol       Date:  2001-11       Impact factor: 5.103
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