Literature DB >> 10592174

The genome sequence DataBase.

C Harger1, G Chen, A Farmer, W Huang, J Inman, D Kiphart, F Schilkey, M P Skupski, J Weller.   

Abstract

The Genome Sequence DataBase (GSDB) is a database of publicly available nucleotide sequences and their associated biological and bibliographic information. Several notable changes have occurred in the past year: GSDB stopped accepting data submissions from researchers; ownership of data submitted to GSDB was transferred to GenBank; sequence analysis capabilities were expanded to include Smith-Waterman and Frame Search; and Sequence Viewer became available to Mac users. The content of GSDB remains up-to-date because publicly available data is acquired from the International Nucleotide Sequence Database Collaboration databases (IC) on a nightly basis. This allows GSDB to continue providing researchers with the ability to analyze, query and retrieve nucleotide sequences in the database. GSDB and its related tools are freely accessible from the URL: http://www.ncgr.org

Mesh:

Year:  2000        PMID: 10592174      PMCID: PMC102463          DOI: 10.1093/nar/28.1.31

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  6 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  DNA Data Bank of Japan dealing with large-scale data submission.

Authors:  H Sugawara; S Miyazaki; T Gojobori; Y Tateno
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

3.  The Genome Sequence DataBase: towards an integrated functional genomics resource.

Authors:  M P Skupski; M Booker; A Farmer; M Harpold; W Huang; J Inman; D Kiphart; C Kodira; S Root; F Schilkey; J Schwertfeger; A Siepel; D Stamper; N Thayer; R Thompson; J Wortman; J J Zhuang; C Harger
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

4.  The Genome Sequence DataBase (GSDB): improving data quality and data access.

Authors:  C Harger; M Skupski; J Bingham; A Farmer; S Hoisie; P Hraber; D Kiphart; L Krakowski; M McLeod; J Schwertfeger; G Seluja; A Siepel; G Singh; D Stamper; P Steadman; N Thayer; R Thompson; P Wargo; M Waugh; J J Zhuang; P A Schad
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

Review 5.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

6.  Identification of common molecular subsequences.

Authors:  T F Smith; M S Waterman
Journal:  J Mol Biol       Date:  1981-03-25       Impact factor: 5.469

  6 in total
  1 in total

1.  The Mouse Gene Expression Database (GXD).

Authors:  M Ringwald; J T Eppig; D A Begley; J P Corradi; I J McCright; T F Hayamizu; D P Hill; J A Kadin; J E Richardson
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

  1 in total

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