Literature DB >> 10592197

GXD: a Gene Expression Database for the laboratory mouse: current status and recent enhancements. The Gene Expresison Database group.

M Ringwald1, J T Eppig, J A Kadin, J E Richardson.   

Abstract

The Gene Expression Database (GXD) is a community resource of gene expression information for the laboratory mouse. The database is designed as an open-ended system that can integrate different types of expression data. New expression data are made available on a daily basis. Thus, GXD provides increasingly complete information about what transcripts and proteins are produced by what genes; where, when and in what amounts these gene products are expressed; and how their expression varies in different mouse strains and mutants. GXD is integrated with the Mouse Genome Database (MGD). Continuously refined interconnections with sequence databases and with databases from other species place the gene expression information in the larger biological and analytical context. GXD is accessible through the Mouse Genome Informatics Web site at http://www.informatics.jax.org/ or directly at http://www.informatics.jax.org/menus/expression_menu.shtm l

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Year:  2000        PMID: 10592197      PMCID: PMC102464          DOI: 10.1093/nar/28.1.115

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  20 in total

1.  An extensive list of genes that produce alternative transcripts in the mouse.

Authors:  M E Mangan; K S Frazer
Journal:  Bioinformatics       Date:  1999-02       Impact factor: 6.937

2.  The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse. The Mouse Genome Database Group.

Authors:  J A Blake; J T Eppig; J E Richardson; M T Davisson
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  The mouse gene expression database GXD

Authors: 
Journal:  Semin Cell Dev Biol       Date:  1997-10       Impact factor: 7.727

Review 4.  Pieces of the puzzle: expressed sequence tags and the catalog of human genes.

Authors:  G D Schuler
Journal:  J Mol Med (Berl)       Date:  1997-10       Impact factor: 4.599

5.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

6.  The I.M.A.G.E. Consortium: an integrated molecular analysis of genomes and their expression.

Authors:  G Lennon; C Auffray; M Polymeropoulos; M B Soares
Journal:  Genomics       Date:  1996-04-01       Impact factor: 5.736

7.  Differential gene expression in the murine thymus assayed by quantitative hybridization of arrayed cDNA clones.

Authors:  C Nguyen; D Rocha; S Granjeaud; M Baldit; K Bernard; P Naquet; B R Jordan
Journal:  Genomics       Date:  1995-09-01       Impact factor: 5.736

8.  The mouse atlas and graphical gene-expression database

Authors: 
Journal:  Semin Cell Dev Biol       Date:  1997-10       Impact factor: 7.727

9.  Expression monitoring by hybridization to high-density oligonucleotide arrays.

Authors:  D J Lockhart; H Dong; M C Byrne; M T Follettie; M V Gallo; M S Chee; M Mittmann; C Wang; M Kobayashi; H Horton; E L Brown
Journal:  Nat Biotechnol       Date:  1996-12       Impact factor: 54.908

10.  A database for mouse development.

Authors:  M Ringwald; R Baldock; J Bard; M Kaufman; J T Eppig; J E Richardson; J H Nadeau; D Davidson
Journal:  Science       Date:  1994-09-30       Impact factor: 47.728

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  13 in total

1.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

2.  Creating the gene ontology resource: design and implementation.

Authors: 
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

3.  Mouse tumor biology database (MTB): enhancements and current status.

Authors:  C J Bult; D M Krupke; J P Sundberg; J T Eppig
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 4.  Leveraging Online Resources to Prioritize Candidate Genes for Functional Analyses: Using the Fetal Testis as a Test Case.

Authors:  Kathryn S McClelland; Humphrey H-C Yao
Journal:  Sex Dev       Date:  2017-02-15       Impact factor: 1.824

5.  Web-based access to mouse models of human cancers: the Mouse Tumor Biology (MTB) Database.

Authors:  C J Bult; D M Krupke; D Näf; J P Sundberg; J T Eppig
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

6.  The Mouse Genome Database (MGD): integration nexus for the laboratory mouse.

Authors:  J A Blake; J T Eppig; J E Richardson; C J Bult; J A Kadin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

7.  The Mouse Gene Expression Database (GXD).

Authors:  M Ringwald; J T Eppig; D A Begley; J P Corradi; I J McCright; T F Hayamizu; D P Hill; J A Kadin; J E Richardson
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

8.  The mouse Gene Expression Database (GXD): updates and enhancements.

Authors:  David P Hill; Dale A Begley; Jacqueline H Finger; Terry F Hayamizu; Ingeborg J McCright; Constance M Smith; Jon S Beal; Lori E Corbani; Judith A Blake; Janan T Eppig; James A Kadin; Joel E Richardson; Martin Ringwald
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

9.  A gene-phenotype network for the laboratory mouse and its implications for systematic phenotyping.

Authors:  Octavio Espinosa; John M Hancock
Journal:  PLoS One       Date:  2011-05-19       Impact factor: 3.240

Review 10.  More than a decade of developmental gene expression atlases: where are we now?

Authors:  Bouke A de Boer; Jan M Ruijter; Frans P J M Voorbraak; Antoon F M Moorman
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971

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