Literature DB >> 9769097

Programmed frameshifting in the synthesis of mammalian antizyme is +1 in mammals, predominantly +1 in fission yeast, but -2 in budding yeast.

I P Ivanov1, R F Gesteland, S Matsufuji, J F Atkins.   

Abstract

The coding sequence for mammalian ornithine decarboxylase antizyme is in two different partially overlapping reading frames with no independent ribosome entry to the second ORF. Immediately before the stop codon of the first ORF, a proportion of ribosomes undergo a quadruplet translocation event to shift to the +1 reading frame of the second and main ORF. The proportion that frameshifts is dependent on the polyamine level and, because the product antizyme is a negative regulator of intracellular polyamine levels, the frameshifting acts to complete an autoregulatory circuit by sensing polyamine levels. An mRNA element just 5' of the shift site and a 3' pseudoknot are important for efficient frameshifting. Previous work has shown that a cassette with the mammalian shift site and associated signals directs efficient shifting in the budding yeast Saccharomyces cerevisiae at the same codon to the correct frame, but that the shift is -2 instead of +1. The product contains an extra amino acid corresponding to the shift site. The present work shows efficient frameshifting also occurs in the fission yeast, Schizosaccharomyces pombe. This frameshifting is 80% +1 and 20% -2. The response of S. pombe translation apparatus to the mammalian antizyme recoding signals is more similar to that of the mammalian system than to that of S. cerevisiae. S. pombe provides a good model system for genetic studies on the mechanism of at least this type of programmed mammalian frameshifting.

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Year:  1998        PMID: 9769097      PMCID: PMC1369695          DOI: 10.1017/s1355838298980864

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  19 in total

1.  Recoding: reprogrammed genetic decoding.

Authors:  R F Gesteland; R B Weiss; J F Atkins
Journal:  Science       Date:  1992-09-18       Impact factor: 47.728

2.  Host genes that influence transposition in yeast: the abundance of a rare tRNA regulates Ty1 transposition frequency.

Authors:  H Xu; J D Boeke
Journal:  Proc Natl Acad Sci U S A       Date:  1990-11       Impact factor: 11.205

3.  Distinct domains of antizyme required for binding and proteolysis of ornithine decarboxylase.

Authors:  X Li; P Coffino
Journal:  Mol Cell Biol       Date:  1994-01       Impact factor: 4.272

4.  Translational maintenance of frame: mutants of Saccharomyces cerevisiae with altered -1 ribosomal frameshifting efficiencies.

Authors:  J D Dinman; R B Wickner
Journal:  Genetics       Date:  1994-01       Impact factor: 4.562

5.  Analyses of ornithine decarboxylase antizyme mRNA with a cDNA cloned from rat liver.

Authors:  S Matsufuji; Y Miyazaki; R Kanamoto; T Kameji; Y Murakami; T G Baby; K Fujita; T Ohno; S Hayashi
Journal:  J Biochem       Date:  1990-09       Impact factor: 3.387

6.  Polyamines regulate the expression of ornithine decarboxylase antizyme in vitro by inducing ribosomal frame-shifting.

Authors:  E Rom; C Kahana
Journal:  Proc Natl Acad Sci U S A       Date:  1994-04-26       Impact factor: 11.205

7.  A ten-minute protocol for transforming Saccharomyces cerevisiae by electroporation.

Authors:  M Grey; M Brendel
Journal:  Curr Genet       Date:  1992-10       Impact factor: 3.886

Review 8.  Genetics of the fission yeast Schizosaccharomyces pombe.

Authors:  J Hayles; P Nurse
Journal:  Annu Rev Genet       Date:  1992       Impact factor: 16.830

9.  Yeast promoters and lacZ fusions designed to study expression of cloned genes in yeast.

Authors:  L Guarente
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

10.  Autoregulatory frameshifting in decoding mammalian ornithine decarboxylase antizyme.

Authors:  S Matsufuji; T Matsufuji; Y Miyazaki; Y Murakami; J F Atkins; R F Gesteland; S Hayashi
Journal:  Cell       Date:  1995-01-13       Impact factor: 41.582

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  21 in total

1.  Maintenance of the correct open reading frame by the ribosome.

Authors:  Thomas M Hansen; Pavel V Baranov; Ivaylo P Ivanov; Raymond F Gesteland; John F Atkins
Journal:  EMBO Rep       Date:  2003-05       Impact factor: 8.807

2.  Introducing a class of standardized and interchangeable parts utilizing programmed ribosomal frameshifts for synthetic biology applications.

Authors:  Harland E Brandon; Jenna R Friedt; Graeme D Glaister; Suneet K Kharey; Dustin D Smith; Zak K Stinson; Hans-Joachim Wieden
Journal:  Translation (Austin)       Date:  2015-11-03

3.  Evolutionary specialization of recoding: frameshifting in the expression of S. cerevisiae antizyme mRNA is via an atypical antizyme shift site but is still +1.

Authors:  Ivaylo P Ivanov; Raymond F Gesteland; John F Atkins
Journal:  RNA       Date:  2006-01-23       Impact factor: 4.942

Review 4.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

5.  Amino acids regulate expression of antizyme-1 to modulate ornithine decarboxylase activity.

Authors:  Ramesh M Ray; Mary Jane Viar; Leonard R Johnson
Journal:  J Biol Chem       Date:  2011-12-07       Impact factor: 5.157

Review 6.  Roles of polyamines in translation.

Authors:  Thomas E Dever; Ivaylo P Ivanov
Journal:  J Biol Chem       Date:  2018-10-15       Impact factor: 5.157

7.  Polyamines regulate their synthesis by inducing expression and blocking degradation of ODC antizyme.

Authors:  R Palanimurugan; Hartmut Scheel; Kay Hofmann; R Jürgen Dohmen
Journal:  EMBO J       Date:  2004-11-11       Impact factor: 11.598

Review 8.  Antizyme and antizyme inhibitor, a regulatory tango.

Authors:  Chaim Kahana
Journal:  Cell Mol Life Sci       Date:  2009-04-28       Impact factor: 9.261

9.  Spacer-length dependence of programmed -1 or -2 ribosomal frameshifting on a U6A heptamer supports a role for messenger RNA (mRNA) tension in frameshifting.

Authors:  Zhaoru Lin; Robert J C Gilbert; Ian Brierley
Journal:  Nucleic Acids Res       Date:  2012-06-28       Impact factor: 16.971

10.  Ribosomal frameshifting used in influenza A virus expression occurs within the sequence UCC_UUU_CGU and is in the +1 direction.

Authors:  A E Firth; B W Jagger; H M Wise; C C Nelson; K Parsawar; N M Wills; S Napthine; J K Taubenberger; P Digard; J F Atkins
Journal:  Open Biol       Date:  2012-10       Impact factor: 6.411

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