Literature DB >> 16431984

Evolutionary specialization of recoding: frameshifting in the expression of S. cerevisiae antizyme mRNA is via an atypical antizyme shift site but is still +1.

Ivaylo P Ivanov, Raymond F Gesteland, John F Atkins.   

Abstract

An autoregulatory translational shift to the +1 frame is required for the expression of ornithine decarboxylase antizyme from fungi to mammals. In most eukaryotes, including all vertebrates and a majority of the studied fungi/yeast, the site on antizyme mRNA where the shift occurs is UCC-UGA. The mechanism of the frameshift on this sequence likely involves nearly universal aspects of the eukaryotic translational machinery. Nevertheless, a mammalian antizyme frameshift cassette yields predominantly -2 frameshift in Saccharomyces cerevisiae, instead of the +1 in mammals. The recently identified endogenous S. cerevisiae antizyme mRNA has an atypical shift site: UGC-GCG-UGA. It is shown here that endogenous S. cerevisiae antizyme frameshifting is +1 rather than -2. We discuss how antizyme frameshifting in budding yeasts exploits peculiarities of their tRNA balance, and relate this to prior studies on Ty frameshifting.

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Year:  2006        PMID: 16431984      PMCID: PMC1383572          DOI: 10.1261/rna.2245906

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  47 in total

1.  Maintenance of the correct open reading frame by the ribosome.

Authors:  Thomas M Hansen; Pavel V Baranov; Ivaylo P Ivanov; Raymond F Gesteland; John F Atkins
Journal:  EMBO Rep       Date:  2003-05       Impact factor: 8.807

Review 2.  P-site tRNA is a crucial initiator of ribosomal frameshifting.

Authors:  Pavel V Baranov; Raymond F Gesteland; John F Atkins
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

3.  Polyamines regulate their synthesis by inducing expression and blocking degradation of ODC antizyme.

Authors:  R Palanimurugan; Hartmut Scheel; Kay Hofmann; R Jürgen Dohmen
Journal:  EMBO J       Date:  2004-11-11       Impact factor: 11.598

4.  Antizyme is a target of sex-lethal in the Drosophila germline and appears to act downstream of hedgehog to regulate sex-lethal and cyclin B.

Authors:  Cynthia Vied; Naomi Halachmi; Adi Salzberg; Jamila I Horabin
Journal:  Dev Biol       Date:  2003-01-15       Impact factor: 3.582

5.  Glypican-1 is a vehicle for polyamine uptake in mammalian cells: a pivital role for nitrosothiol-derived nitric oxide.

Authors:  Mattias Belting; Katrin Mani; Mats Jönsson; Fang Cheng; Staffan Sandgren; Susanne Jonsson; Kan Ding; Jean-Guy Delcros; Lars-Ake Fransson
Journal:  J Biol Chem       Date:  2003-09-11       Impact factor: 5.157

6.  Translational accuracy during exponential, postdiauxic, and stationary growth phases in Saccharomyces cerevisiae.

Authors:  Guillaume Stahl; Samia N Ben Salem; Lifeng Chen; Bing Zhao; Philip J Farabaugh
Journal:  Eukaryot Cell       Date:  2004-04

7.  Developmentally programmed gene elimination in Euplotes crassus facilitates a switch in the telomerase catalytic subunit.

Authors:  Zemfira Karamysheva; Libin Wang; Timothy Shrode; Janna Bednenko; Leigh Anne Hurley; Dorothy E Shippen
Journal:  Cell       Date:  2003-05-30       Impact factor: 41.582

Review 8.  Polyamine-dependent gene expression.

Authors:  A C Childs; D J Mehta; E W Gerner
Journal:  Cell Mol Life Sci       Date:  2003-07       Impact factor: 9.261

Review 9.  A perspective of polyamine metabolism.

Authors:  Heather M Wallace; Alison V Fraser; Alun Hughes
Journal:  Biochem J       Date:  2003-11-15       Impact factor: 3.857

Review 10.  Programmed +1 translational frameshifting in the yeast Saccharomyces cerevisiae results from disruption of translational error correction.

Authors:  G Stahl; S Ben Salem; Z Li; G McCarty; A Raman; M Shah; P J Farabaugh
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2001
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  8 in total

Review 1.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

Review 2.  Roles of polyamines in translation.

Authors:  Thomas E Dever; Ivaylo P Ivanov
Journal:  J Biol Chem       Date:  2018-10-15       Impact factor: 5.157

Review 3.  Ribosomal frameshifting in decoding antizyme mRNAs from yeast and protists to humans: close to 300 cases reveal remarkable diversity despite underlying conservation.

Authors:  Ivaylo P Ivanov; John F Atkins
Journal:  Nucleic Acids Res       Date:  2007-03-01       Impact factor: 16.971

Review 4.  Stress and polyamine metabolism in fungi.

Authors:  Laura Valdés-Santiago; José Ruiz-Herrera
Journal:  Front Chem       Date:  2014-01-10       Impact factor: 5.221

Review 5.  Phenotypic mutations contribute to protein diversity and shape protein evolution.

Authors:  Maria Luisa Romero Romero; Cedric Landerer; Jonas Poehls; Agnes Toth-Petroczy
Journal:  Protein Sci       Date:  2022-09       Impact factor: 6.993

6.  Nucleotide modifications in three functionally important regions of the Saccharomyces cerevisiae ribosome affect translation accuracy.

Authors:  Agnès Baudin-Baillieu; Céline Fabret; Xue-Hai Liang; Dorota Piekna-Przybylska; Maurille J Fournier; Jean-Pierre Rousset
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971

7.  Polyamine metabolism in fungi with emphasis on phytopathogenic species.

Authors:  Laura Valdés-Santiago; José Antonio Cervantes-Chávez; Claudia Geraldine León-Ramírez; José Ruiz-Herrera
Journal:  J Amino Acids       Date:  2012-08-22

8.  High-throughput interrogation of programmed ribosomal frameshifting in human cells.

Authors:  Martin Mikl; Yitzhak Pilpel; Eran Segal
Journal:  Nat Commun       Date:  2020-06-16       Impact factor: 14.919

  8 in total

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