Literature DB >> 7813017

Autoregulatory frameshifting in decoding mammalian ornithine decarboxylase antizyme.

S Matsufuji1, T Matsufuji, Y Miyazaki, Y Murakami, J F Atkins, R F Gesteland, S Hayashi.   

Abstract

Rat antizyme gene expression requires programmed, ribosomal frameshifting. A novel autoregulatory mechanism enables modulation of frameshifting according to the cellular concentration of polyamines. Antizyme binds to, and destabilizes, ornithine decarboxylase, a key enzyme in polyamine synthesis. Rapid degradation ensues, thus completing a regulatory circuit. In vitro experiments with a fusion construct using reticulocyte lysates demonstrate polyamine-dependent expression with a frameshift efficiency of 19% at the optimal concentration of spermidine. The frameshift is +1 and occurs at the codon just preceding the terminator of the initiating frame. Both the termination codon of the initiating frame and a pseudoknot downstream in the mRNA have a stimulatory effect. The shift site sequence, UCC-UGA-U, is not similar to other known frameshift sites. The mechanism does not seem to involve re-pairing of peptidyl-tRNA in the new frame but rather reading or occlusion of a fourth base.

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Year:  1995        PMID: 7813017      PMCID: PMC7133313          DOI: 10.1016/0092-8674(95)90450-6

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  43 in total

1.  Vectors for constitutive and inducible gene expression in yeast.

Authors:  M Schena; D Picard; K R Yamamoto
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

2.  The appearance of an ornithine decarboxylase inhibitory protein upon the addition of putrescine to cell cultures.

Authors:  W F Fong; J S Heller; E S Canellakis
Journal:  Biochim Biophys Acta       Date:  1976-04-23

3.  Antizyme, a protein induced by polyamines, accelerates the degradation of ornithine decarboxylase in Chinese-hamster ovary-cell extracts.

Authors:  Y Murakami; K Tanaka; S Matsufuji; Y Miyazaki; S Hayashi
Journal:  Biochem J       Date:  1992-05-01       Impact factor: 3.857

4.  A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions.

Authors:  R Higuchi; B Krummel; R K Saiki
Journal:  Nucleic Acids Res       Date:  1988-08-11       Impact factor: 16.971

5.  Use of tRNA suppressors to probe regulation of Escherichia coli release factor 2.

Authors:  J F Curran; M Yarus
Journal:  J Mol Biol       Date:  1988-09-05       Impact factor: 5.469

6.  Degradation of ornithine decarboxylase: exposure of the C-terminal target by a polyamine-inducible inhibitory protein.

Authors:  X Li; P Coffino
Journal:  Mol Cell Biol       Date:  1993-04       Impact factor: 4.272

7.  ATP- and antizyme-dependent endoproteolysis of ornithine decarboxylase to oligopeptides by the 26 S proteasome.

Authors:  F Tokunaga; T Goto; T Koide; Y Murakami; S Hayashi; T Tamura; K Tanaka; A Ichihara
Journal:  J Biol Chem       Date:  1994-07-01       Impact factor: 5.157

8.  High efficiency T7 polymerase synthesis of infectious RNA from cloned brome mosaic virus cdna and effects of 5' extensions on transcript infectivity.

Authors:  M Janda; R French; P Ahlquist
Journal:  Virology       Date:  1987-05       Impact factor: 3.616

9.  Coding from a distance: dissection of the mRNA determinants required for the incorporation of selenocysteine into protein.

Authors:  J Heider; C Baron; A Böck
Journal:  EMBO J       Date:  1992-10       Impact factor: 11.598

Review 10.  Ribosome gymnastics--degree of difficulty 9.5, style 10.0.

Authors:  J F Atkins; R B Weiss; R F Gesteland
Journal:  Cell       Date:  1990-08-10       Impact factor: 41.582

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  185 in total

1.  Programmed ribosomal frameshifting: much ado about knotting!

Authors:  S L Alam; J F Atkins; R F Gesteland
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

2.  RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression.

Authors:  P V Baranov; O L Gurvich; O Fayet; M F Prère; W A Miller; R F Gesteland; J F Atkins; M C Giddings
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

Review 3.  Polyamines in spermiogenesis: not now, darling.

Authors:  P Coffino
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-25       Impact factor: 11.205

4.  Kinetics of ribosomal pausing during programmed -1 translational frameshifting.

Authors:  J D Lopinski; J D Dinman; J A Bruenn
Journal:  Mol Cell Biol       Date:  2000-02       Impact factor: 4.272

5.  Maintenance of the correct open reading frame by the ribosome.

Authors:  Thomas M Hansen; Pavel V Baranov; Ivaylo P Ivanov; Raymond F Gesteland; John F Atkins
Journal:  EMBO Rep       Date:  2003-05       Impact factor: 8.807

6.  Cloning of a polycistronic cDNA from tomato encoding gamma-glutamyl kinase and gamma-glutamyl phosphate reductase.

Authors:  M García-Ríos; T Fujita; P C LaRosa; R D Locy; J M Clithero; R A Bressan; L N Csonka
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-22       Impact factor: 11.205

7.  Translational recoding signals between gag and pol in diverse LTR retrotransposons.

Authors:  Xiang Gao; Ericka R Havecker; Pavel V Baranov; John F Atkins; Daniel F Voytas
Journal:  RNA       Date:  2003-12       Impact factor: 4.942

Review 8.  P-site tRNA is a crucial initiator of ribosomal frameshifting.

Authors:  Pavel V Baranov; Raymond F Gesteland; John F Atkins
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

9.  Comparative studies of frameshifting and nonframeshifting RNA pseudoknots: a mutational and NMR investigation of pseudoknots derived from the bacteriophage T2 gene 32 mRNA and the retroviral gag-pro frameshift site.

Authors:  Yue Wang; Norma M Wills; Zhihua Du; Anupama Rangan; John F Atkins; Raymond F Gesteland; David W Hoffman
Journal:  RNA       Date:  2002-08       Impact factor: 4.942

10.  Antizyme frameshifting as a functional probe of eukaryotic translational termination.

Authors:  Zemfira N Karamysheva; Andrey L Karamyshev; Koichi Ito; Takashi Yokogawa; Kazuya Nishikawa; Yoshikazu Nakamura; Senya Matsufuji
Journal:  Nucleic Acids Res       Date:  2003-10-15       Impact factor: 16.971

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