Literature DB >> 8443162

CO recombination to human myoglobin mutants in glycerol-water solutions.

S Balasubramanian1, D G Lambright, M C Marden, S G Boxer.   

Abstract

The kinetics of CO recombination to site-specific mutants of human myoglobin have been studied by flash photolysis in the temperature range 250-320 K on the nanosecond to second time scale in 75% glycerol at pH 7. The mutants were constructed to examine specific proposals concerning the roles of Lys 45, Asp 60, and Val 68 in the ligand binding process. It is found that ligand recombination is nonexponential for all the mutants and that both the geminate amplitude and rate show large variations. The results are interpreted in terms of specific models connecting the dynamics and structure. It is shown that removal of the charged group at position 45 does not substantially affect the barrier height for escape or entry of the ligand; therefore the breakage of the salt bridge linking Lys 45, Asp 60, and a heme propionate is ruled out as the rate-determining barrier for this process. On the other hand, it is found that the escape barrier decreases roughly as size of the residue at position 68 increases, in the order Ala > Val > Asn > Leu. The residue at position 68 is also a major contributor to the final barrier to rebinding, but the barrier height shows no correlation with residue size and is more dependent on the stereochemistry of the residue. A molecular mechanism for ligand binding that is consistent with the results is discussed, and supporting evidence for this mechanism is examined.

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Year:  1993        PMID: 8443162     DOI: 10.1021/bi00060a011

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

1.  Protein dynamics in an intermediate state of myoglobin: optical absorption, resonance Raman spectroscopy, and x-ray structure analysis.

Authors:  N Engler; A Ostermann; A Gassmann; D C Lamb; V E Prusakov; J Schott; R Schweitzer-Stenner; F G Parak
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

2.  Temperature-dependent heme kinetics with nonexponential binding and barrier relaxation in the absence of protein conformational substates.

Authors:  Xiong Ye; Dan Ionascu; Florin Gruia; Anchi Yu; Abdelkrim Benabbas; Paul M Champion
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-05       Impact factor: 11.205

3.  Pressure effects on the proximal heme pocket in myoglobin probed by Raman and near-infrared absorption spectroscopy.

Authors:  O Galkin; S Buchter; A Tabirian; A Schulte
Journal:  Biophys J       Date:  1997-11       Impact factor: 4.033

4.  Ligand binding to heme proteins. VI. Interconversion of taxonomic substates in carbonmonoxymyoglobin.

Authors:  J B Johnson; D C Lamb; H Frauenfelder; J D Müller; B McMahon; G U Nienhaus; R D Young
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

5.  Spin-dependent mechanism for diatomic ligand binding to heme.

Authors:  Stefan Franzen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

6.  Perturbations of the distal heme pocket in human myoglobin mutants probed by infrared spectroscopy of bound CO: correlation with ligand binding kinetics.

Authors:  S Balasubramanian; D G Lambright; S G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  1993-05-15       Impact factor: 11.205

7.  Ligand binding to heme proteins: III. FTIR studies of His-E7 and Val-E11 mutants of carbonmonoxymyoglobin.

Authors:  D P Braunstein; K Chu; K D Egeberg; H Frauenfelder; J R Mourant; G U Nienhaus; P Ormos; S G Sligar; B A Springer; R D Young
Journal:  Biophys J       Date:  1993-12       Impact factor: 4.033

8.  Myoglobin mutants giving the largest geminate yield in CO rebinding in the nanosecond time domain.

Authors:  T Sugimoto; M Unno; Y Shiro; Y Dou; M Ikeda-Saito
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

9.  Measurements of heme relaxation and ligand recombination in strong magnetic fields.

Authors:  Zhenyu Zhang; Abdelkrim Benabbas; Xiong Ye; Anchi Yu; Paul M Champion
Journal:  J Phys Chem B       Date:  2009-08-06       Impact factor: 2.991

10.  1H and 15N resonance assignments and secondary structure of the carbon monoxide complex of sperm whale myoglobin.

Authors:  Y Thériault; T C Pochapsky; C Dalvit; M L Chiu; S G Sligar; P E Wright
Journal:  J Biomol NMR       Date:  1994-07       Impact factor: 2.835

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