Literature DB >> 12477933

Spin-dependent mechanism for diatomic ligand binding to heme.

Stefan Franzen1.   

Abstract

The nature of diatomic ligand recombination in heme proteins is elucidated by using a Landau-Zener model for the electronic coupling in the recombination rate constant. The model is developed by means of explicit potential energy surfaces calculated by using density functional theory (DFT). The interaction of all possible spin states of the three common diatomic ligands, CO, NO, and O2, and high-spin heme iron is compared. The electronic coupling, rebinding barrier, and Landau-Zener force terms can be obtained and used to demonstrate significant differences among the ligands. In particular the intermediate spin states of NO (S = 32) and O2 (S = 1) are shown to be bound states. Rapid recombination occurs from these bound states in agreement with experimental data. The slower phases of O2 recombination can be explained by the presence of two higher spin states, S = 2 and S = 3, which have a small and relatively large barrier to ligand recombination, respectively. By contrast, the intermediate spin state for CO is not a bound state, and the only recombination pathway for CO involves direct recombination from the S = 2 state. This process is significantly slower according to the Landau-Zener model. Quantitative estimates of the parameters used in the rate constants provide a complete description that explains rebinding rates that range from femtoseconds to milliseconds at ambient temperature.

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Year:  2002        PMID: 12477933      PMCID: PMC139216          DOI: 10.1073/pnas.252590999

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  A steric mechanism for inhibition of CO binding to heme proteins.

Authors:  G S Kachalova; A N Popov; H D Bartunik
Journal:  Science       Date:  1999-04-16       Impact factor: 47.728

2.  Ligand binding to heme proteins: connection between dynamics and function.

Authors:  P J Steinbach; A Ansari; J Berendzen; D Braunstein; K Chu; B R Cowen; D Ehrenstein; H Frauenfelder; J B Johnson; D C Lamb
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

3.  Ligand binding and protein relaxation in heme proteins: a room temperature analysis of NO geminate recombination.

Authors:  J W Petrich; J C Lambry; K Kuczera; M Karplus; C Poyart; J L Martin
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

4.  Heme photolysis occurs by ultrafast excited state metal-to-ring charge transfer.

Authors:  S Franzen; L Kiger; C Poyart; J L Martin
Journal:  Biophys J       Date:  2001-05       Impact factor: 4.033

Review 5.  Probing protein structure and dynamics with resonance Raman spectroscopy: cytochrome c peroxidase and hemoglobin.

Authors:  T G Spiro; G Smulevich; C Su
Journal:  Biochemistry       Date:  1990-05-15       Impact factor: 3.162

6.  Simulation of the kinetics of ligand binding to a protein by molecular dynamics: geminate rebinding of nitric oxide to myoglobin.

Authors:  O Schaad; H X Zhou; A Szabo; W A Eaton; E R Henry
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-15       Impact factor: 11.205

7.  Ligand and proton exchange dynamics in recombinant human myoglobin mutants.

Authors:  D G Lambright; S Balasubramanian; S G Boxer
Journal:  J Mol Biol       Date:  1989-05-05       Impact factor: 5.469

8.  Ultrafast measurements of geminate recombination of NO with site-specific mutants of human myoglobin.

Authors:  J W Petrich; J C Lambry; S Balasubramanian; D G Lambright; S G Boxer; J L Martin
Journal:  J Mol Biol       Date:  1994-05-06       Impact factor: 5.469

9.  Heme charge-transfer band III is vibronically coupled to the Soret band.

Authors:  Stefan Franzen; Stacie E Wallace-Williams; Andrew P Shreve
Journal:  J Am Chem Soc       Date:  2002-06-19       Impact factor: 15.419

10.  Geminate recombination of diatomic ligands CO, O2, and NO with myoglobin.

Authors:  K N Walda; X Y Liu; V S Sharma; D Magde
Journal:  Biochemistry       Date:  1994-03-01       Impact factor: 3.162

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  24 in total

1.  Effect of DNA binding on geminate CO recombination kinetics in CO-sensing transcription factor CooA.

Authors:  Abdelkrim Benabbas; Venugopal Karunakaran; Hwan Youn; Thomas L Poulos; Paul M Champion
Journal:  J Biol Chem       Date:  2012-04-28       Impact factor: 5.157

2.  Picosecond primary structural transition of the heme is retarded after nitric oxide binding to heme proteins.

Authors:  Sergei G Kruglik; Byung-Kuk Yoo; Stefan Franzen; Marten H Vos; Jean-Louis Martin; Michel Negrerie
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

3.  Blocking the gate to ligand entry in human hemoglobin.

Authors:  Ivan Birukou; Jayashree Soman; John S Olson
Journal:  J Biol Chem       Date:  2010-12-29       Impact factor: 5.157

4.  NO binding kinetics in myoglobin investigated by picosecond Fe K-edge absorption spectroscopy.

Authors:  Mahsa Silatani; Frederico A Lima; Thomas J Penfold; Jochen Rittmann; Marco E Reinhard; Hannelore M Rittmann-Frank; Camelia Borca; Daniel Grolimund; Christopher J Milne; Majed Chergui
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-05       Impact factor: 11.205

5.  Studying reactive processes with classical dynamics: rebinding dynamics in MbNO.

Authors:  David R Nutt; Markus Meuwly
Journal:  Biophys J       Date:  2005-12-02       Impact factor: 4.033

6.  Temperature-dependent studies of NO recombination to heme and heme proteins.

Authors:  Dan Ionascu; Flaviu Gruia; Xiong Ye; Anchi Yu; Florin Rosca; Chris Beck; Andrey Demidov; John S Olson; Paul M Champion
Journal:  J Am Chem Soc       Date:  2005-12-07       Impact factor: 15.419

7.  Transition metal spin state energetics and noninnocent systems: challenges for DFT in the bioinorganic arena.

Authors:  Abhik Ghosh
Journal:  J Biol Inorg Chem       Date:  2006-07-14       Impact factor: 3.358

8.  Temperature-dependent heme kinetics with nonexponential binding and barrier relaxation in the absence of protein conformational substates.

Authors:  Xiong Ye; Dan Ionascu; Florin Gruia; Anchi Yu; Abdelkrim Benabbas; Paul M Champion
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-05       Impact factor: 11.205

9.  Lessons Learned from 50 Years of Hemoglobin Research: Unstirred and Cell-Free Layers, Electrostatics, Baseball Gloves, and Molten Globules.

Authors:  John S Olson
Journal:  Antioxid Redox Signal       Date:  2019-10-17       Impact factor: 8.401

10.  A quantitative model for oxygen uptake and release in a family of hemeproteins.

Authors:  Juan P Bustamante; María E Szretter; Mariela Sued; Marcelo A Martí; Darío A Estrin; Leonardo Boechi
Journal:  Bioinformatics       Date:  2016-02-15       Impact factor: 6.937

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