Literature DB >> 8346021

Direct selection of DNA sequences conserved between species.

Z Sedlacek1, D S Konecki, R Siebenhaar, P Kioschis, A Poustka.   

Abstract

An essential requirement in the analysis of genomes is the identification of functionally important sequence elements, which are often evolutionarily conserved. We describe here the development of a novel procedure for the selective isolation of conserved sequences which is based on hybridization of PCR-amplifiable DNA fragments from the whole genome of one species to biotinylated DNA from a genomic region of another species. The interspecies DNA hybrids are immobilized and the PCR-amplifiable DNA fragments are eluted, amplified and after further hybridization-amplification rounds cloned. This method was used for the generation of sublibraries of conserved sequences from mouse and pig DNA from regions corresponding to cosmids from the human Xq28 region. Mouse and pig homologs of sequences containing exons of known human genes, as well as exons from novel genes have been identified.

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Year:  1993        PMID: 8346021      PMCID: PMC331440          DOI: 10.1093/nar/21.15.3419

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  21 in total

1.  Identification and characterization of a new gene in the human Xq28 region.

Authors:  A M van den Ouweland; P Kioschis; M Verdijk; F Tamanini; D Toniolo; A Poustka; B A van Oost
Journal:  Hum Mol Genet       Date:  1992-07       Impact factor: 6.150

2.  Cloning and sequence of a cDNA encoding rat glucose-6-phosphate dehydrogenase.

Authors:  Y S Ho; A J Howard; J D Crapo
Journal:  Nucleic Acids Res       Date:  1988-08-11       Impact factor: 16.971

3.  Base composition-independent hybridization in tetramethylammonium chloride: a method for oligonucleotide screening of highly complex gene libraries.

Authors:  W I Wood; J Gitschier; L A Lasky; R M Lawn
Journal:  Proc Natl Acad Sci U S A       Date:  1985-03       Impact factor: 11.205

Review 4.  The Alu family of dispersed repetitive sequences.

Authors:  C W Schmid; W R Jelinek
Journal:  Science       Date:  1982-06-04       Impact factor: 47.728

5.  Buffer gradient gels and 35S label as an aid to rapid DNA sequence determination.

Authors:  M D Biggin; T J Gibson; G F Hong
Journal:  Proc Natl Acad Sci U S A       Date:  1983-07       Impact factor: 11.205

6.  Genomic organization of a cDNA (QM) demonstrating an altered mRNA level in nontumorigenic Wilms' microcell hybrid cells and its localization to Xq28.

Authors:  K Kaneko; H Kobayashi; O Onodera; T Miyatake; S Tsuji
Journal:  Hum Mol Genet       Date:  1992-10       Impact factor: 6.150

7.  Isolation of human glucose-6-phosphate dehydrogenase (G6PD) cDNA clones: primary structure of the protein and unusual 5' non-coding region.

Authors:  M G Persico; G Viglietto; G Martini; D Toniolo; G Paonessa; C Moscatelli; R Dono; T Vulliamy; L Luzzatto; M D'Urso
Journal:  Nucleic Acids Res       Date:  1986-03-25       Impact factor: 16.971

8.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

9.  Isolation of candidate cDNAs for portions of the Duchenne muscular dystrophy gene.

Authors:  A P Monaco; R L Neve; C Colletti-Feener; C J Bertelson; D M Kurnit; L M Kunkel
Journal:  Nature       Date:  1986 Oct 16-22       Impact factor: 49.962

10.  Existence of glucose-6-phosphate dehydrogenase-like locus on chromosome 17.

Authors:  A Yoshida; R V Lebo
Journal:  Am J Hum Genet       Date:  1986-08       Impact factor: 11.025

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  5 in total

1.  Direct selection of cDNAs using whole chromosomes.

Authors:  S Rouquier; B J Trask; S Taviaux; G van den Engh; S Diriong; G G Lennon; D Giorgi
Journal:  Nucleic Acids Res       Date:  1995-11-11       Impact factor: 16.971

Review 2.  Coincidence cloning. Taking the coincidences out of genome analysis.

Authors:  R S Devon; A J Brookes
Journal:  Mol Biotechnol       Date:  1996-06       Impact factor: 2.695

3.  Identification of tissue-specific expressed sequences in human band Xq28 with complex pig cDNA probes.

Authors:  J F Coy; P Kioschis; Z Sedlacek; A Poustka
Journal:  Mamm Genome       Date:  1994-03       Impact factor: 2.957

4.  Direct selection of conserved cDNAs from the DiGeorge critical region: isolation of a novel CDC45-like gene.

Authors:  J M McKie; R B Wadey; H F Sutherland; C L Taylor; P J Scambler
Journal:  Genome Res       Date:  1998-08       Impact factor: 9.043

5.  Evolutionary conservation and genomic organization of XAP-4, an Xq28 located gene coding for a human rab GDP-dissociation inhibitor (GDI).

Authors:  Z Sedlacek; D S Konecki; B Korn; S M Klauck; A Poustka
Journal:  Mamm Genome       Date:  1994-10       Impact factor: 2.957

  5 in total

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