Literature DB >> 8837030

Coincidence cloning. Taking the coincidences out of genome analysis.

R S Devon1, A J Brookes.   

Abstract

The term "coincidence cloning" encompasses a wide range of methodologies, the aim of which is to isolate DNA sequences which occur in both of two input DNA sources. The nature of these input DNAs may be genomic or cDNA, cloned or uncloned, and as such the far reaching applicability of the techniques can be imagined. If the input DNAs are genomic then the product will be enriched for useful markers co-occurring between the two. If the input DNAs comprise one genomic resource and one cDNA resource the product will contain genes mapping to that particular genomic region. In this review a comparative description of the range of coincidence cloning methods is given, together with a discussion of their applications. Finally, consideration is given to the general limitations of these techniques.

Mesh：

Year:  1996        PMID： 8837030     DOI： 10.1007/bf02900362

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN： 1073-6085            Impact factor:   2.695


  27 in total

Review 1.  Coincident sequence cloning: a new approach to genome analysis.

Authors:  A J Brookes; D J Porteous
Journal:  Trends Biotechnol       Date:  1992 Jan-Feb       Impact factor: 19.536

2.  Rapid isolation of desired sequences from lone linker PCR amplified cDNA mixtures: application to identification and recovery of expressed sequences in cloned genomic DNA.

Authors:  K Abe
Journal:  Mamm Genome       Date:  1992       Impact factor: 2.957

3.  Exon trapping: a genetic screen to identify candidate transcribed sequences in cloned mammalian genomic DNA.

Authors:  G M Duyk; S W Kim; R M Myers; D R Cox
Journal:  Proc Natl Acad Sci U S A       Date:  1990-11       Impact factor: 11.205

4.  cDNA selection: efficient PCR approach for the selection of cDNAs encoded in large chromosomal DNA fragments.

Authors:  S Parimoo; S R Patanjali; H Shukla; D D Chaplin; S M Weissman
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-01       Impact factor: 11.205

5.  Direct selection: a method for the isolation of cDNAs encoded by large genomic regions.

Authors:  M Lovett; J Kere; L M Hinton
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-01       Impact factor: 11.205

6.  Alu polymerase chain reaction: a method for rapid isolation of human-specific sequences from complex DNA sources.

Authors:  D L Nelson; S A Ledbetter; L Corbo; M F Victoria; R Ramírez-Solis; T D Webster; D H Ledbetter; C T Caskey
Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

7.  A method for identifying genes within yeast artificial chromosomes: application to isolation of MLL fusion cDNAs from acute leukaemia translocations.

Authors:  A Forster; T H Rabbitts
Journal:  Oncogene       Date:  1993-11       Impact factor: 9.867

8.  Catch-linker + PCR labeling: a simple method to generate fluorescence in situ hybridization probes from yeast artificial chromosomes.

Authors:  Y Shibasaki; J C Maule; R S Devon; E M Slorach; J R Gosden; D J Porteous; A J Brookes
Journal:  PCR Methods Appl       Date:  1995-02

9.  Cytogenetic analysis by chromosome painting using DOP-PCR amplified flow-sorted chromosomes.

Authors:  H Telenius; A H Pelmear; A Tunnacliffe; N P Carter; A Behmel; M A Ferguson-Smith; M Nordenskjöld; R Pfragner; B A Ponder
Journal:  Genes Chromosomes Cancer       Date:  1992-04       Impact factor: 5.006

10.  Isolation of region-specific probes from pig chromosome 6 by coincidence cloning.

Authors:  E Frengen; P D Thomsen; A Schmitz; G Frelat; W Davies
Journal:  Mamm Genome       Date:  1994-08       Impact factor: 2.957
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  1 in total

1.  Non-methylated Genomic Sites Coincidence Cloning (NGSCC): an approach to large scale analysis of hypomethylated CpG patterns at predetermined genomic loci.

Authors:  T Azhikina; I Gainetdinov; Yu Skvortsova; A Batrak; N Dmitrieva; E Sverdlov
Journal:  Mol Genet Genomics       Date:  2003-12-10       Impact factor: 3.291
  1 in total

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