Literature DB >> 1988957

Water structure in cubic insulin crystals.

J Badger1, D L Caspar.   

Abstract

The electron density distribution of the solvent in the cubic insulin crystal structure, which occupies 65% of the volume, has been mapped from 1.7-A resolution diffraction data by an iterative difference Fourier method, using the previously determined protein structure as the refinement restraint. Starting with phases from the protein and a flat solvent model, the difference map calculated from the data was added outside the protein envelope, and the modified map was then used to recalculate phases for the iterative refinement. Tests of the method with model data, with the experimental data and a variant protein model, and by carrying out a partial refinement of the solvent map demonstrate that the refinement algorithm produces reliable values for the solvent density within the noise level of the data. Fluctuations in density are observed throughout the solvent space, demonstrating that nonrandom arrangements of the water molecules extend several layers from the well-ordered hydration shell in contact with the protein surface. Such ordering may account for the hydration force opposing close approach of hydrophilic surfaces and other long-range water-dependent interactions in living structures.

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Year:  1991        PMID: 1988957      PMCID: PMC50864          DOI: 10.1073/pnas.88.2.622

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  16 in total

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Authors:  A H Narten; H A Levy
Journal:  Science       Date:  1969-08-01       Impact factor: 47.728

2.  Diffraction diagnosis of protein folding in gap junction connexons.

Authors:  T T Tibbitts; D L Caspar; W C Phillips; D A Goodenough
Journal:  Biophys J       Date:  1990-05       Impact factor: 4.033

3.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

4.  Solvent effect in protein crystals. A neutron diffraction analysis of solvent and ion density.

Authors:  B P Schoenborn
Journal:  J Mol Biol       Date:  1988-06-20       Impact factor: 5.469

Review 5.  Areas, volumes, packing and protein structure.

Authors:  F M Richards
Journal:  Annu Rev Biophys Bioeng       Date:  1977

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  The structure of 2Zn pig insulin crystals at 1.5 A resolution.

Authors:  E N Baker; T L Blundell; J F Cutfield; S M Cutfield; E J Dodson; G G Dodson; D M Hodgkin; R E Hubbard; N W Isaacs; C D Reynolds
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1988-07-06       Impact factor: 6.237

8.  Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices.

Authors:  D C Rau; B Lee; V A Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  1984-05       Impact factor: 11.205

9.  The crystal structure of insulin. II. An investigation of rhombohedral zinc insulin crystals and a report of other crystalline forms.

Authors:  M M Harding; D C Hodgkin; A F Kennedy; A O'Conor; P D Weitzmann
Journal:  J Mol Biol       Date:  1966-03       Impact factor: 5.469

10.  Water structure of a hydrophobic protein at atomic resolution: Pentagon rings of water molecules in crystals of crambin.

Authors:  M M Teeter
Journal:  Proc Natl Acad Sci U S A       Date:  1984-10       Impact factor: 11.205

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  22 in total

1.  The dynamics of protein hydration water: a quantitative comparison of molecular dynamics simulations and neutron-scattering experiments.

Authors:  M Tarek; D J Tobias
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

2.  Is the first hydration shell of lysozyme of higher density than bulk water?

Authors:  Franci Merzel; Jeremy C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

3.  A model for water motion in crystals of lysozyme based on an incoherent quasielastic neutron-scattering study.

Authors:  C Bon; A J Dianoux; M Ferrand; M S Lehmann
Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

Review 4.  Structure, dynamics and reactions of protein hydration water.

Authors:  Jeremy C Smith; Franci Merzel; Ana-Nicoleta Bondar; Alexander Tournier; Stefan Fischer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

5.  Conformational changes in cubic insulin crystals in the pH range 7-11.

Authors:  O Gursky; J Badger; Y Li; D L Caspar
Journal:  Biophys J       Date:  1992-11       Impact factor: 4.033

6.  Atomic force microscopy of insulin single crystals: direct visualization of molecules and crystal growth.

Authors:  C M Yip; M D Ward
Journal:  Biophys J       Date:  1996-08       Impact factor: 4.033

7.  Raman spectral evidence for hydration forces between collagen triple helices.

Authors:  S Leikin; V A Parsegian; W Yang; G E Walrafen
Journal:  Proc Natl Acad Sci U S A       Date:  1997-10-14       Impact factor: 11.205

8.  Structure of cubic insulin crystals in glucose solutions.

Authors:  B Yu; D L Caspar
Journal:  Biophys J       Date:  1998-01       Impact factor: 4.033

9.  Ordered water molecules as key allosteric mediators in a cooperative dimeric hemoglobin.

Authors:  W E Royer; A Pardanani; Q H Gibson; E S Peterson; J M Friedman
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

10.  Dynamical coupling of intrinsically disordered proteins and their hydration water: comparison with folded soluble and membrane proteins.

Authors:  F-X Gallat; A Laganowsky; K Wood; F Gabel; L van Eijck; J Wuttke; M Moulin; M Härtlein; D Eisenberg; J-P Colletier; G Zaccai; M Weik
Journal:  Biophys J       Date:  2012-07-03       Impact factor: 4.033

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