Literature DB >> 8267715

A novel programed frameshift expresses the POL3 gene of retrotransposon Ty3 of yeast: frameshifting without tRNA slippage.

P J Farabaugh1, H Zhao, A Vimaladithan.   

Abstract

Most retroviruses and retrotransposons express their pol gene as a translational fusion to the upstream gag gene, often involving translational frameshifting. We describe here an unusual translational frameshift event occurring between the GAG3 and POL3 genes of the retrotransposon Ty3 of yeast. A +1 frameshift occurs within the sequence GCG AGU U (shown as codons of GAG3), encoding alanine-valine (GCG A GUU). Unlike other programed translational frameshifts described, this event does not require tRNA slippage between cognate or near-cognate codons in the mRNA. Two features distal to the GCG codon stimulate frameshifting. The low availability of the tRNA specific for the "hungry" serine codon, AGU, induces a translational pause required for frameshifting. A sequence of 12 nt distal to the AGU codon (termed the Ty3 "context") also stimulates the event.

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Year:  1993        PMID: 8267715      PMCID: PMC7172889          DOI: 10.1016/0092-8674(93)90297-4

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  43 in total

1.  Transposition of a Ty3 GAG3-POL3 fusion mutant is limited by availability of capsid protein.

Authors:  J Kirchner; S B Sandmeyer; D B Forrest
Journal:  J Virol       Date:  1992-10       Impact factor: 5.103

2.  Ribosomal movement impeded at a pseudoknot required for frameshifting.

Authors:  C Tu; T H Tzeng; J A Bruenn
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-15       Impact factor: 11.205

3.  Context rules of rightward overlapping reading.

Authors:  K Peter; D Lindsley; L Peng; J A Gallant
Journal:  New Biol       Date:  1992-05

Review 4.  Translational accuracy and the fitness of bacteria.

Authors:  C G Kurland
Journal:  Annu Rev Genet       Date:  1992       Impact factor: 16.830

5.  The role of EF-Tu and other translation components in determining translocation step size.

Authors:  T M Tuohy; S Thompson; R F Gesteland; D Hughes; J F Atkins
Journal:  Biochim Biophys Acta       Date:  1990-08-27

6.  Transfer RNA genes are genomic targets for de Novo transposition of the yeast retrotransposon Ty3.

Authors:  D L Chalker; S B Sandmeyer
Journal:  Genetics       Date:  1990-12       Impact factor: 4.562

7.  Use of tRNA suppressors to probe regulation of Escherichia coli release factor 2.

Authors:  J F Curran; M Yarus
Journal:  J Mol Biol       Date:  1988-09-05       Impact factor: 5.469

8.  Reading frame selection and transfer RNA anticodon loop stacking.

Authors:  J F Curran; M Yarus
Journal:  Science       Date:  1987-12-11       Impact factor: 47.728

9.  Codon choice and gene expression: synonymous codons differ in translational accuracy.

Authors:  D B Dix; R C Thompson
Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

10.  RNA pseudoknots: translational frameshifting and readthrough on viral RNAs.

Authors:  E B ten Dam; C W Pleij; L Bosch
Journal:  Virus Genes       Date:  1990-07       Impact factor: 2.332

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  82 in total

1.  Translational suppressors and antisuppressors alter the efficiency of the Ty1 programmed translational frameshift.

Authors:  C L Burck; Y O Chernoff; R Liu; P J Farabaugh; S W Liebman
Journal:  RNA       Date:  1999-11       Impact factor: 4.942

2.  One protein from two open reading frames: mechanism of a 50 nt translational bypass.

Authors:  A J Herr; R F Gesteland; J F Atkins
Journal:  EMBO J       Date:  2000-06-01       Impact factor: 11.598

3.  Programmed +1 frameshifting stimulated by complementarity between a downstream mRNA sequence and an error-correcting region of rRNA.

Authors:  Z Li; G Stahl; P J Farabaugh
Journal:  RNA       Date:  2001-02       Impact factor: 4.942

Review 4.  How translational accuracy influences reading frame maintenance.

Authors:  P J Farabaugh; G R Björk
Journal:  EMBO J       Date:  1999-03-15       Impact factor: 11.598

5.  Nonsense-mediated decay mutants do not affect programmed -1 frameshifting.

Authors:  L Bidou; G Stahl; I Hatin; O Namy; J P Rousset; P J Farabaugh
Journal:  RNA       Date:  2000-07       Impact factor: 4.942

6.  Expression and processing of proteins encoded by the Saccharomyces retrotransposon Ty5.

Authors:  P A Irwin; D F Voytas
Journal:  J Virol       Date:  2001-02       Impact factor: 5.103

7.  Decoding of tandem quadruplets by adjacent tRNAs with eight-base anticodon loops.

Authors:  B Moore; C C Nelson; B C Persson; R F Gesteland; J F Atkins
Journal:  Nucleic Acids Res       Date:  2000-09-15       Impact factor: 16.971

8.  Maintenance of the correct open reading frame by the ribosome.

Authors:  Thomas M Hansen; Pavel V Baranov; Ivaylo P Ivanov; Raymond F Gesteland; John F Atkins
Journal:  EMBO Rep       Date:  2003-05       Impact factor: 8.807

9.  Special peptidyl-tRNA molecules can promote translational frameshifting without slippage.

Authors:  A Vimaladithan; P J Farabaugh
Journal:  Mol Cell Biol       Date:  1994-12       Impact factor: 4.272

10.  SPE1 and SPE2: two essential genes in the biosynthesis of polyamines that modulate +1 ribosomal frameshifting in Saccharomyces cerevisiae.

Authors:  D Balasundaram; J D Dinman; C W Tabor; H Tabor
Journal:  J Bacteriol       Date:  1994-11       Impact factor: 3.490

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