Literature DB >> 8114730

Rous sarcoma virus RNA stability requires an open reading frame in the gag gene and sequences downstream of the gag-pol junction.

G F Barker1, K Beemon.   

Abstract

The intracellular accumulation of the unspliced RNA of Rous sarcoma virus was decreased when translation was prematurely terminated by the introduction of nonsense codons within its 5' proximal gene, the gag gene. Subcellular fractionation of transfected cells suggested that nonsense codon-mediated instability occurred in the cytoplasm. Analysis of constructs containing an in-frame deletion in the nucleocapsid domain of gag, which prevents interaction between the Gag protein and viral RNA, showed that an open reading frame extending to approximately 30 nucleotides from the natural gag termination codon was needed for RNA stability. Sequences at the gag-pol junction necessary for ribosomal frameshifting were not required for RNA stability; however, sequences located 100 to 200 nucleotides downstream of the natural gag termination codon were found to be necessary for stable RNA. The stability of RNAs lacking this downstream sequence was not markedly affected by premature termination codons. We propose that this downstream RNA sequence may interact with ribosomes translating gag to stabilize the RNA.

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Year:  1994        PMID: 8114730      PMCID: PMC358558          DOI: 10.1128/mcb.14.3.1986-1996.1994

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  21 in total

1.  Rous sarcoma virus nucleic acid-binding protein p12 is necessary for viral 70S RNA dimer formation and packaging.

Authors:  C Méric; P F Spahr
Journal:  J Virol       Date:  1986-11       Impact factor: 5.103

2.  Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.

Authors:  P Chomczynski; N Sacchi
Journal:  Anal Biochem       Date:  1987-04       Impact factor: 3.365

3.  Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter.

Authors:  D A Melton; P A Krieg; M R Rebagliati; T Maniatis; K Zinn; M R Green
Journal:  Nucleic Acids Res       Date:  1984-09-25       Impact factor: 16.971

4.  Nucleotide sequence of Rous sarcoma virus.

Authors:  D E Schwartz; R Tizard; W Gilbert
Journal:  Cell       Date:  1983-03       Impact factor: 41.582

5.  A comprehensive set of sequence analysis programs for the VAX.

Authors:  J Devereux; P Haeberli; O Smithies
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

6.  Isolation of nuclei from animal cells in culture.

Authors:  G D Birnie
Journal:  Methods Cell Biol       Date:  1978       Impact factor: 1.441

7.  Beta-globin nonsense mutation: deficient accumulation of mRNA occurs despite normal cytoplasmic stability.

Authors:  S J Baserga; E J Benz
Journal:  Proc Natl Acad Sci U S A       Date:  1992-04-01       Impact factor: 11.205

8.  Complete sequence of the chicken glyceraldehyde-3-phosphate dehydrogenase gene.

Authors:  E M Stone; K N Rothblum; M C Alevy; T M Kuo; R J Schwartz
Journal:  Proc Natl Acad Sci U S A       Date:  1985-03       Impact factor: 11.205

9.  pp60c-src has less affinity for the detergent-insoluble cellular matrix than do pp60v-src and other viral protein-tyrosine kinases.

Authors:  D M Loeb; J Woolford; K Beemon
Journal:  J Virol       Date:  1987-08       Impact factor: 5.103

10.  Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region.

Authors:  T Jacks; H D Madhani; F R Masiarz; H E Varmus
Journal:  Cell       Date:  1988-11-04       Impact factor: 41.582

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  29 in total

1.  A 3' UTR sequence stabilizes termination codons in the unspliced RNA of Rous sarcoma virus.

Authors:  Jason E Weil; Karen L Beemon
Journal:  RNA       Date:  2005-11-21       Impact factor: 4.942

2.  Avian retroviral RNA element promotes unspliced RNA accumulation in the cytoplasm.

Authors:  R A Ogert; L H Lee; K L Beemon
Journal:  J Virol       Date:  1996-06       Impact factor: 5.103

Review 3.  Retroviral strategy to stabilize viral RNA.

Authors:  Bao Lin Quek; Karen Beemon
Journal:  Curr Opin Microbiol       Date:  2014-03-13       Impact factor: 7.934

Review 4.  Physiological and pathophysiological role of nonsense-mediated mRNA decay.

Authors:  Franziska Ottens; Niels H Gehring
Journal:  Pflugers Arch       Date:  2016-04-30       Impact factor: 3.657

Review 5.  Viral Evasion and Manipulation of Host RNA Quality Control Pathways.

Authors:  J Robert Hogg
Journal:  J Virol       Date:  2016-07-27       Impact factor: 5.103

6.  Nonsense-mediated decay of human HEXA mRNA.

Authors:  K S Rajavel; E F Neufeld
Journal:  Mol Cell Biol       Date:  2001-08       Impact factor: 4.272

7.  Mammalian nonsense codons can be cis effectors of nuclear mRNA half-life.

Authors:  P Belgrader; J Cheng; X Zhou; L S Stephenson; L E Maquat
Journal:  Mol Cell Biol       Date:  1994-12       Impact factor: 4.272

8.  Structural features in the Rous sarcoma virus RNA stability element are necessary for sensing the correct termination codon.

Authors:  Johanna B Withers; Karen L Beemon
Journal:  Retrovirology       Date:  2010-08-05       Impact factor: 4.602

9.  Unspliced Rous sarcoma virus genomic RNAs are translated and subjected to nonsense-mediated mRNA decay before packaging.

Authors:  Jason J LeBlanc; Karen L Beemon
Journal:  J Virol       Date:  2004-05       Impact factor: 5.103

10.  Structural characterization of the Rous sarcoma virus RNA stability element.

Authors:  Jason E Weil; Michalis Hadjithomas; Karen L Beemon
Journal:  J Virol       Date:  2008-12-17       Impact factor: 5.103

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