Literature DB >> 27226372

Viral Evasion and Manipulation of Host RNA Quality Control Pathways.

J Robert Hogg1.   

Abstract

Viruses have evolved diverse strategies to maximize the functional and coding capacities of their genetic material. Individual viral RNAs are often used as substrates for both replication and translation and can contain multiple, sometimes overlapping open reading frames. Further, viral RNAs engage in a wide variety of interactions with both host and viral proteins to modify the activities of important cellular factors and direct their own trafficking, packaging, localization, stability, and translation. However, adaptations increasing the information density of small viral genomes can have unintended consequences. In particular, viral RNAs have developed features that mark them as potential targets of host RNA quality control pathways. This minireview focuses on ways in which viral RNAs run afoul of the cellular mRNA quality control and decay machinery, as well as on strategies developed by viruses to circumvent or exploit cellular mRNA surveillance.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2016        PMID: 27226372      PMCID: PMC4984649          DOI: 10.1128/JVI.00607-16

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  123 in total

1.  An mRNA surveillance mechanism that eliminates transcripts lacking termination codons.

Authors:  Pamela A Frischmeyer; Ambro van Hoof; Kathryn O'Donnell; Anthony L Guerrerio; Roy Parker; Harry C Dietz
Journal:  Science       Date:  2002-03-22       Impact factor: 47.728

Review 2.  Execution of nonsense-mediated mRNA decay: what defines a substrate?

Authors:  Indrani Rebbapragada; Jens Lykke-Andersen
Journal:  Curr Opin Cell Biol       Date:  2009-04-07       Impact factor: 8.382

Review 3.  Quality control systems for aberrant mRNAs induced by aberrant translation elongation and termination.

Authors:  Toshifumi Inada
Journal:  Biochim Biophys Acta       Date:  2013-02-14

4.  Kaposi's sarcoma-associated herpesvirus gene expression in endothelial (spindle) tumor cells.

Authors:  K A Staskus; W Zhong; K Gebhard; B Herndier; H Wang; R Renne; J Beneke; J Pudney; D J Anderson; D Ganem; A T Haase
Journal:  J Virol       Date:  1997-01       Impact factor: 5.103

5.  Importance of polyadenylation in the selective elimination of meiotic mRNAs in growing S. pombe cells.

Authors:  Soichiro Yamanaka; Akira Yamashita; Yuriko Harigaya; Ryo Iwata; Masayuki Yamamoto
Journal:  EMBO J       Date:  2010-05-28       Impact factor: 11.598

6.  Identification of a quality-control mechanism for mRNA 5'-end capping.

Authors:  Xinfu Jiao; Song Xiang; Chanseok Oh; Charles E Martin; Liang Tong; Megerditch Kiledjian
Journal:  Nature       Date:  2010-08-29       Impact factor: 49.962

7.  The human RNA surveillance factor UPF1 is required for S phase progression and genome stability.

Authors:  Claus M Azzalin; Joachim Lingner
Journal:  Curr Biol       Date:  2006-02-21       Impact factor: 10.834

8.  PSF acts through the human immunodeficiency virus type 1 mRNA instability elements to regulate virus expression.

Authors:  Andrei S Zolotukhin; Daniel Michalowski; Jenifer Bear; Sergey V Smulevitch; Abdulmaged M Traish; Rui Peng; James Patton; Ivan N Shatsky; Barbara K Felber
Journal:  Mol Cell Biol       Date:  2003-09       Impact factor: 4.272

9.  Formation of triple-helical structures by the 3'-end sequences of MALAT1 and MENβ noncoding RNAs.

Authors:  Jessica A Brown; Max L Valenstein; Therese A Yario; Kazimierz T Tycowski; Joan A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-05       Impact factor: 11.205

10.  HIV-1 Recruits UPF1 but Excludes UPF2 to Promote Nucleocytoplasmic Export of the Genomic RNA.

Authors:  Lara Ajamian; Karen Abel; Shringar Rao; Kishanda Vyboh; Francisco García-de-Gracia; Ricardo Soto-Rifo; Andreas E Kulozik; Niels H Gehring; Andrew J Mouland
Journal:  Biomolecules       Date:  2015-10-20
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  19 in total

Review 1.  Nonsense-mediated mRNA decay: The challenge of telling right from wrong in a complex transcriptome.

Authors:  Aparna Kishor; Sarah E Fritz; J Robert Hogg
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-05-26       Impact factor: 9.957

2.  hnRNP L-dependent protection of normal mRNAs from NMD subverts quality control in B cell lymphoma.

Authors:  Aparna Kishor; Zhiyun Ge; J Robert Hogg
Journal:  EMBO J       Date:  2018-12-07       Impact factor: 11.598

Review 3.  Diverse mechanisms evolved by DNA viruses to inhibit early host defenses.

Authors:  Marni S Crow; Krystal K Lum; Xinlei Sheng; Bokai Song; Ileana M Cristea
Journal:  Crit Rev Biochem Mol Biol       Date:  2016-09-21       Impact factor: 8.250

4.  Identification of phlebovirus and arenavirus RNA sequences that stall and repress the exoribonuclease XRN1.

Authors:  Phillida A Charley; Carol J Wilusz; Jeffrey Wilusz
Journal:  J Biol Chem       Date:  2017-11-08       Impact factor: 5.157

Review 5.  Regulators of Viral Frameshifting: More Than RNA Influences Translation Events.

Authors:  Wesley D Penn; Haley R Harrington; Jonathan P Schlebach; Suchetana Mukhopadhyay
Journal:  Annu Rev Virol       Date:  2020-06-29       Impact factor: 10.431

6.  Senecavirus A Enhances Its Adaptive Evolution via Synonymous Codon Bias Evolution.

Authors:  Simiao Zhao; Huiqi Cui; Zhenru Hu; Li Du; Xuhua Ran; Xiaobo Wen
Journal:  Viruses       Date:  2022-05-16       Impact factor: 5.818

7.  Structural Mimicry Drives HIV-1 Rev-Mediated HERV-K Expression.

Authors:  Ina P O'Carroll; Lixin Fan; Tomáš Kroupa; Erin K McShane; Christophe Theodore; Elizabeth A Yates; Benjamin Kondrup; Jienyu Ding; Tyler S Martin; Alan Rein; Yun-Xing Wang
Journal:  J Mol Biol       Date:  2020-11-14       Impact factor: 5.469

Review 8.  Targeting of viral RNAs by Upf1-mediated RNA decay pathways.

Authors:  Jared P May; Anne E Simon
Journal:  Curr Opin Virol       Date:  2020-12-17       Impact factor: 7.090

9.  An expanded class of histidine-accepting viral tRNA-like structures.

Authors:  Conner J Langeberg; Madeline E Sherlock; Andrea MacFadden; Jeffrey S Kieft
Journal:  RNA       Date:  2021-04-02       Impact factor: 5.636

10.  Genome-wide association study of the seed transmission rate of soybean mosaic virus and associated traits using two diverse population panels.

Authors:  Qiong Liu; Houston A Hobbs; Leslie L Domier
Journal:  Theor Appl Genet       Date:  2019-10-19       Impact factor: 5.574

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