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Literature DB >> 6546423

A comprehensive set of sequence analysis programs for the VAX.

Abstract

The University of Wisconsin Genetics Computer Group (UWGCG) has been organized to develop computational tools for the analysis and publication of biological sequence data. A group of programs that will interact with each other has been developed for the Digital Equipment Corporation VAX computer using the VMS operating system. The programs available and the conditions for transfer are described.

Mesh：

Substances：
DNA

Year: 1984 PMID： 6546423 PMCID： PMC321012 DOI： 10.1093/nar/12.1part1.387

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

10 in total

1. A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors: S B Needleman; C D Wunsch
Journal: J Mol Biol Date: 1970-03 Impact factor: 5.469

2. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.

Authors: M Zuker; P Stiegler
Journal: Nucleic Acids Res Date: 1981-01-10 Impact factor: 16.971

3. Enhanced graphic matrix analysis of nucleic acid and protein sequences.

Authors: J V Maizel; R P Lenk
Journal: Proc Natl Acad Sci U S A Date: 1981-12 Impact factor: 11.205

4. Statistical characterization of nucleic acid sequence functional domains.

Authors: T F Smith; M S Waterman; J R Sadler
Journal: Nucleic Acids Res Date: 1983-04-11 Impact factor: 16.971

5. GEL, a DNA sequencing project management system.

Authors: J Clayton; L Kedes
Journal: Nucleic Acids Res Date: 1982-01-11 Impact factor: 16.971

6. Formal description of a DNA oriented computer language.

Authors: J L Schroeder; F R Blattner
Journal: Nucleic Acids Res Date: 1982-01-11 Impact factor: 16.971

7. A new computer method for the storage and manipulation of DNA gel reading data.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1980-08-25 Impact factor: 16.971

8. Codon catalog usage is a genome strategy modulated for gene expressivity.

Authors: R Grantham; C Gautier; M Gouy; M Jacobzone; R Mercier
Journal: Nucleic Acids Res Date: 1981-01-10 Impact factor: 16.971

9. Recognition of protein coding regions in DNA sequences.

Authors: J W Fickett
Journal: Nucleic Acids Res Date: 1982-09-11 Impact factor: 16.971

10. Base substitutions, length differences and DNA strand asymmetries in the human G gamma and A gamma fetal globin gene region.

Authors: O Smithies; W R Engels; J R Devereux; J L Slightom; S Shen
Journal: Cell Date: 1981-11 Impact factor: 41.582

10 in total

2000 in total

10. Type 2 NADH dehydrogenases in the cyanobacterium Synechocystis sp. strain PCC 6803 are involved in regulation rather than respiration.

Authors: C A Howitt; P K Udall; W F Vermaas
Journal: J Bacteriol Date: 1999-07 Impact factor: 3.490

A comprehensive set of sequence analysis programs for the VAX.

1. A general method applicable to the search for similarities in the amino acid sequence of two proteins.

2. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.

3. Enhanced graphic matrix analysis of nucleic acid and protein sequences.

4. Statistical characterization of nucleic acid sequence functional domains.

5. GEL, a DNA sequencing project management system.

6. Formal description of a DNA oriented computer language.

7. A new computer method for the storage and manipulation of DNA gel reading data.

8. Codon catalog usage is a genome strategy modulated for gene expressivity.

9. Recognition of protein coding regions in DNA sequences.

10. Base substitutions, length differences and DNA strand asymmetries in the human G gamma and A gamma fetal globin gene region.

1. The subgenus-specific C-terminal region of protein IX is located on the surface of the adenovirus capsid.

2. Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin.

3. Role in cell permeability of an essential two-component system in Staphylococcus aureus.

4. Effect of pectin methylesterase gene expression on pea root development.

5. Sequence analysis of the gene encoding VP4 of a bovine group C rotavirus: molecular evidence for a new P genotype.

6. Transterm: a database of messenger RNA components and signals.

7. Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences.

8. MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins.

9. Role of the Ets-1 transcription factor during activation of rat hepatic stellate cells in culture.

10. Type 2 NADH dehydrogenases in the cyanobacterium Synechocystis sp. strain PCC 6803 are involved in regulation rather than respiration.