Literature DB >> 7799937

Pulling the ribosome out of frame by +1 at a programmed frameshift site by cognate binding of aminoacyl-tRNA.

S Pande1, A Vimaladithan, H Zhao, P J Farabaugh.   

Abstract

Programmed translational frameshifts efficiently alter a translational reading frame by shifting the reading frame during translation. A +1 frameshift has two simultaneous requirements: a translational pause which occurs when either an inefficiently recognized sense or termination codon occupies the A site, and the presence of a special peptidyl-tRNA occupying the P site during the pause. The special nature of the peptidyl-tRNA reflects its ability to slip +1 on the mRNA or to facilitate binding of an incoming aminoacyl-tRNA out of frame in the A site. This second mechanism suggested that in some cases the first +1 frame tRNA could have an active role in frameshifting. We found that overproducing this tRNA can drive frameshifting, surprisingly regardless of whether frameshifting occurs by peptidyl-tRNA slippage or out-of-frame binding of aminoacyl-tRNA. This finding suggests that in both cases, the shift in reading frame occurs coincident with formation of a cognate codon-anticodon interaction in the shifted frame.

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Year:  1995        PMID: 7799937      PMCID: PMC231956          DOI: 10.1128/MCB.15.1.298

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  23 in total

Review 1.  Translational accuracy and the fitness of bacteria.

Authors:  C G Kurland
Journal:  Annu Rev Genet       Date:  1992       Impact factor: 16.830

Review 2.  Translational termination: "stop" for protein synthesis or "pause" for regulation of gene expression.

Authors:  W P Tate; C M Brown
Journal:  Biochemistry       Date:  1992-03-10       Impact factor: 3.162

3.  Sequence analysis suggests that tetra-nucleotides signal the termination of protein synthesis in eukaryotes.

Authors:  C M Brown; P A Stockwell; C N Trotman; W P Tate
Journal:  Nucleic Acids Res       Date:  1990-11-11       Impact factor: 16.971

4.  Frameshift autoregulation in the gene for Escherichia coli release factor 2: partly functional mutants result in frameshift enhancement.

Authors:  B C Donly; C D Edgar; F M Adamski; W P Tate
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

5.  The signal for the termination of protein synthesis in procaryotes.

Authors:  C M Brown; P A Stockwell; C N Trotman; W P Tate
Journal:  Nucleic Acids Res       Date:  1990-04-25       Impact factor: 16.971

6.  Special peptidyl-tRNA molecules can promote translational frameshifting without slippage.

Authors:  A Vimaladithan; P J Farabaugh
Journal:  Mol Cell Biol       Date:  1994-12       Impact factor: 4.272

7.  The translational termination signal database.

Authors:  C M Brown; M E Dalphin; P A Stockwell; W P Tate
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

8.  Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site.

Authors:  M F Belcourt; P J Farabaugh
Journal:  Cell       Date:  1990-07-27       Impact factor: 41.582

9.  Analysis of effects of tRNA:message stability on frameshift frequency at the Escherichia coli RF2 programmed frameshift site.

Authors:  J F Curran
Journal:  Nucleic Acids Res       Date:  1993-04-25       Impact factor: 16.971

10.  A novel programed frameshift expresses the POL3 gene of retrotransposon Ty3 of yeast: frameshifting without tRNA slippage.

Authors:  P J Farabaugh; H Zhao; A Vimaladithan
Journal:  Cell       Date:  1993-07-16       Impact factor: 41.582

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  32 in total

1.  Translational suppressors and antisuppressors alter the efficiency of the Ty1 programmed translational frameshift.

Authors:  C L Burck; Y O Chernoff; R Liu; P J Farabaugh; S W Liebman
Journal:  RNA       Date:  1999-11       Impact factor: 4.942

2.  Programmed +1 frameshifting stimulated by complementarity between a downstream mRNA sequence and an error-correcting region of rRNA.

Authors:  Z Li; G Stahl; P J Farabaugh
Journal:  RNA       Date:  2001-02       Impact factor: 4.942

3.  Maintenance of the correct open reading frame by the ribosome.

Authors:  Thomas M Hansen; Pavel V Baranov; Ivaylo P Ivanov; Raymond F Gesteland; John F Atkins
Journal:  EMBO Rep       Date:  2003-05       Impact factor: 8.807

4.  Translational recoding signals between gag and pol in diverse LTR retrotransposons.

Authors:  Xiang Gao; Ericka R Havecker; Pavel V Baranov; John F Atkins; Daniel F Voytas
Journal:  RNA       Date:  2003-12       Impact factor: 4.942

Review 5.  P-site tRNA is a crucial initiator of ribosomal frameshifting.

Authors:  Pavel V Baranov; Raymond F Gesteland; John F Atkins
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

6.  Evolutionary specialization of recoding: frameshifting in the expression of S. cerevisiae antizyme mRNA is via an atypical antizyme shift site but is still +1.

Authors:  Ivaylo P Ivanov; Raymond F Gesteland; John F Atkins
Journal:  RNA       Date:  2006-01-23       Impact factor: 4.942

7.  Role of premature stop codons in bacterial evolution.

Authors:  Tit-Yee Wong; Sanjit Fernandes; Naby Sankhon; Patrick P Leong; Jimmy Kuo; Jong-Kang Liu
Journal:  J Bacteriol       Date:  2008-08-15       Impact factor: 3.490

Review 8.  Programmed translational frameshifting.

Authors:  P J Farabaugh
Journal:  Microbiol Rev       Date:  1996-03

9.  Visualization of two transfer RNAs trapped in transit during elongation factor G-mediated translocation.

Authors:  David J F Ramrath; Laura Lancaster; Thiemo Sprink; Thorsten Mielke; Justus Loerke; Harry F Noller; Christian M T Spahn
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

10.  An unmodified wobble uridine in tRNAs specific for Glutamine, Lysine, and Glutamic acid from Salmonella enterica Serovar Typhimurium results in nonviability-Due to increased missense errors?

Authors:  Kristina Nilsson; Gunilla Jäger; Glenn R Björk
Journal:  PLoS One       Date:  2017-04-21       Impact factor: 3.240

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