Literature DB >> 8332534

The translational termination signal database.

C M Brown1, M E Dalphin, P A Stockwell, W P Tate.   

Abstract

The Translational Termination Database (TransTerm) consists of the immediate context sequences around the natural termination codons from 45 organisms, and summary tables. The influence of termination codon context on their effectivness as stop signals has been widely documented. The SPECIES--TRI.DAT table shows trinucleotide stop codon usage in each organism and for comparison the occurrence of these sequences in the noncoding region. The SPECIES--TETRA.DAT table contains is a similar table of tetranucleotide stop signal usage. The database is available from EMBL.

Entities:  

Mesh：

Substances：

Year:  1993        PMID： 8332534      PMCID： PMC309741          DOI： 10.1093/nar/21.13.3119

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  15 in total

1.  Recoding: reprogrammed genetic decoding.

Authors:  R F Gesteland; R B Weiss; J F Atkins
Journal:  Science       Date:  1992-09-18       Impact factor: 47.728

2.  Analysis of the stop codon context in plant nuclear genes.

Authors:  G Angenon; M Van Montagu; A Depicker
Journal:  FEBS Lett       Date:  1990-10-01       Impact factor: 4.124

3.  Effects of the nucleotide 3' to an amber codon on ribosomal selection rates of suppressor tRNA and release factor-1.

Authors:  W T Pedersen; J F Curran
Journal:  J Mol Biol       Date:  1991-05-20       Impact factor: 5.469

4.  Sequence analysis suggests that tetra-nucleotides signal the termination of protein synthesis in eukaryotes.

Authors:  C M Brown; P A Stockwell; C N Trotman; W P Tate
Journal:  Nucleic Acids Res       Date:  1990-11-11       Impact factor: 16.971

5.  Nonrandom utilization of codon pairs in Escherichia coli.

Authors:  G A Gutman; G W Hatfield
Journal:  Proc Natl Acad Sci U S A       Date:  1989-05       Impact factor: 11.205

6.  Eukaryotic start and stop translation sites.

Authors:  D R Cavener; S C Ray
Journal:  Nucleic Acids Res       Date:  1991-06-25       Impact factor: 16.971

Review 7.  Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli.

Authors:  G Eggertsson; D Söll
Journal:  Microbiol Rev       Date:  1988-09

8.  The signal for the termination of protein synthesis in procaryotes.

Authors:  C M Brown; P A Stockwell; C N Trotman; W P Tate
Journal:  Nucleic Acids Res       Date:  1990-04-25       Impact factor: 16.971

9.  UGA can be decoded as tryptophan at low efficiency in Bacillus subtilis.

Authors:  P S Lovett; N P Ambulos; W Mulbry; N Noguchi; E J Rogers
Journal:  J Bacteriol       Date:  1991-03       Impact factor: 3.490

Review 10.  The where, what and how of ribosomal frameshifting in retroviral protein synthesis.

Authors:  D Hatfield; S Oroszlan
Journal:  Trends Biochem Sci       Date:  1990-05       Impact factor: 13.807
View more
  38 in total

1.  Transterm: a database of messenger RNA components and signals.

Authors:  G H Jacobs; P A Stockwell; M J Schrieber; W P Tate; C M Brown
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Termination and peptide release at the upstream open reading frame are required for downstream translation on synthetic shunt-competent mRNA leaders.

Authors:  M Hemmings-Mieszczak; T Hohn; T Preiss
Journal:  Mol Cell Biol       Date:  2000-09       Impact factor: 4.272

Review 3.  Hydroxylation and translational adaptation to stress: some answers lie beyond the STOP codon.

Authors:  M J Katz; L Gándara; A L De Lella Ezcurra; P Wappner
Journal:  Cell Mol Life Sci       Date:  2016-02-13       Impact factor: 9.261

4.  The linear plasmid prophage Vp58.5 of Vibrio parahaemolyticus is closely related to the integrating phage VHML and constitutes a new incompatibility group of telomere phages.

Authors:  Beatriz Zabala; Jens A Hammerl; Romilio T Espejo; Stefan Hertwig
Journal:  J Virol       Date:  2009-07-08       Impact factor: 5.103

5.  Decoding with the A:I wobble pair is inefficient.

Authors:  J F Curran
Journal:  Nucleic Acids Res       Date:  1995-02-25       Impact factor: 16.971

6.  Mutation in the structural gene for release factor 1 (RF-1) of Salmonella typhimurium inhibits cell division.

Authors:  O Olafsson; J U Ericson; R VanBogelen; G R Björk
Journal:  J Bacteriol       Date:  1996-07       Impact factor: 3.490

7.  The translational signal database, TransTerm, is now a relational database.

Authors:  M E Dalphin; C M Brown; P A Stockwell; W P Tate
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

8.  The translational signal database, TransTerm: more organisms, complete genomes.

Authors:  M E Dalphin; C M Brown; P A Stockwell; W P Tate
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

9.  Translational termination in Escherichia coli: three bases following the stop codon crosslink to release factor 2 and affect the decoding efficiency of UGA-containing signals.

Authors:  E S Poole; L L Major; S A Mannering; W P Tate
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

Review 10.  Termination of protein synthesis.

Authors:  M F Tuite; I Stansfield
Journal:  Mol Biol Rep       Date:  1994-05       Impact factor: 2.316
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.