Literature DB >> 7681481

A nonlinear filter algorithm for the detection of jumps in patch-clamp data.

R Schultze1, S Draber.   

Abstract

This paper presents a new algorithm for the detection of channel openings and closures from noisy current signals, especially for the correct generation and interpretation of open-time and closed-time histograms. The Hinkley detector is a nonlinear off-line jump detection algorithm from the field of fault detection. Here, an improved version, the higher-order Hinkley detector H.O.H.D., is developed. A general description of the sensitivity of a detector is introduced by the time resolution tres. This allows a comparison of the nonlinear detectors with the standard threshold detectors preceded by a low-pass filter for noise suppression. By means of application to simulated and real data, the performance of the detection algorithms is investigated. The higher-order Hinkley detector gave the best results with respect to correct reconstruction of the event length, to a small amount of missed brief events as well as to the ability to achieve short time resolution without pretending false events, especially in the presence of colored noise.

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Year:  1993        PMID: 7681481     DOI: 10.1007/bf00233050

Source DB:  PubMed          Journal:  J Membr Biol        ISSN: 0022-2631            Impact factor:   1.843


  6 in total

1.  Yet another approach to the dwell-time omission problem of single-channel analysis.

Authors:  S C Crouzy; F J Sigworth
Journal:  Biophys J       Date:  1990-09       Impact factor: 4.033

2.  Correcting single channel data for missed events.

Authors:  A L Blatz; K L Magleby
Journal:  Biophys J       Date:  1986-05       Impact factor: 4.033

3.  Open channel noise. IV. Estimation of rapid kinetics of formamide block in gramicidin A channels.

Authors:  S H Heinemann; F J Sigworth
Journal:  Biophys J       Date:  1988-10       Impact factor: 4.033

4.  Patch-clamp studies on the anomalous mole fraction effect of the K+ channel in cytoplasmic droplets of Nitella: an attempt to distinguish between a multi-ion single-file pore and an enzyme kinetic model with lazy state.

Authors:  S Draber; R Schultze; U P Hansen
Journal:  J Membr Biol       Date:  1991-08       Impact factor: 1.843

5.  Conformational changes associated with ion permeation in L-type calcium channels.

Authors:  D Pietrobon; B Prod'hom; P Hess
Journal:  Nature       Date:  1988-05-26       Impact factor: 49.962

6.  Ionic permeation and blockade in Ca2+-activated K+ channels of bovine chromaffin cells.

Authors:  G Yellen
Journal:  J Gen Physiol       Date:  1984-08       Impact factor: 4.086

  6 in total
  26 in total

1.  The anomalous mole fraction effect in Chara: gating at the edge of temporal resolution.

Authors:  A Farokhi; M Keunecke; U P Hansen
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

2.  Restoration of single-channel currents using the segmental k-means method based on hidden Markov modeling.

Authors:  Feng Qin
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

3.  Distributions-per-level: a means of testing level detectors and models of patch-clamp data.

Authors:  I Schröder; T Huth; V Suitchmezian; J Jarosik; S Schnell; U P Hansen
Journal:  J Membr Biol       Date:  2004-01-01       Impact factor: 1.843

Review 4.  How to resolve microsecond current fluctuations in single ion channels: the power of beta distributions.

Authors:  Indra Schroeder
Journal:  Channels (Austin)       Date:  2015       Impact factor: 2.581

5.  Model selection and parameter estimation for ion channel recordings with an application to the K+ outward-rectifier in barley leaf.

Authors:  M C M de Gunst; J G Schouten
Journal:  J Math Biol       Date:  2004-10-07       Impact factor: 2.259

6.  Analysis of single ion channel data incorporating time-interval omission and sampling.

Authors:  Yu-Kai The; Jens Timmer
Journal:  J R Soc Interface       Date:  2006-02-22       Impact factor: 4.118

7.  The power of two-dimensional dwell-time analysis for model discrimination, temporal resolution, multichannel analysis and level detection.

Authors:  Tobias Huth; Indra Schroeder; Ulf-Peter Hansen
Journal:  J Membr Biol       Date:  2007-06-06       Impact factor: 1.843

8.  Four-mode gating model of fast inactivation of sodium channel Nav1.2a.

Authors:  Tobias Huth; Johann Schmidtmayer; Christian Alzheimer; Ulf-Peter Hansen
Journal:  Pflugers Arch       Date:  2008-04-19       Impact factor: 3.657

9.  Statistical assessment of change point detectors for single molecule kinetic analysis.

Authors:  Sean P Parsons; Jan D Huizinga
Journal:  J Membr Biol       Date:  2013-05-08       Impact factor: 1.843

10.  Estimation of kinetic rate constants from multi-channel recordings by a direct fit of the time series.

Authors:  A Albertsen; U P Hansen
Journal:  Biophys J       Date:  1994-10       Impact factor: 4.033

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