Literature DB >> 15480672

Model selection and parameter estimation for ion channel recordings with an application to the K+ outward-rectifier in barley leaf.

M C M de Gunst1, J G Schouten.   

Abstract

We present a statistical method, and its accompanying algorithms, for the selection of a mathematical model of the gating mechanism of an ion channel and for the estimation of the parameters of this model. The method assumes a hidden Markov model that incorporates filtering, colored noise and state-dependent white excess noise for the recorded data. The model selection and parameter estimation are performed via a Bayesian approach using Markov chain Monte Carlo. The method is illustrated by its application to single-channel recordings of the K(+) outward-rectifier in barley leaf.

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Year:  2004        PMID: 15480672     DOI: 10.1007/s00285-004-0287-1

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  12 in total

1.  Activation kinetics of the K(+) outward rectifying conductance (KORC) in xylem parenchyma cells from barley roots.

Authors:  L H Wegner; A H De Boer
Journal:  J Membr Biol       Date:  1999-07-15       Impact factor: 1.843

2.  A chi(2) test for model determination and sublevel detection in ion channel analysis.

Authors:  A Caliebe; U Rösler; U-P Hansen
Journal:  J Membr Biol       Date:  2002-01-13       Impact factor: 1.843

3.  Maximum likelihood estimation and identification directly from single-channel recordings.

Authors:  D R Fredkin; J A Rice
Journal:  Proc Biol Sci       Date:  1992-08-22       Impact factor: 5.349

Review 4.  Stochastic models for ion channels: introduction and bibliography.

Authors:  F G Ball; J A Rice
Journal:  Math Biosci       Date:  1992-12       Impact factor: 2.144

5.  Characterization of single channel currents using digital signal processing techniques based on Hidden Markov Models.

Authors:  S H Chung; J B Moore; L G Xia; L S Premkumar; P W Gage
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1990-09-29       Impact factor: 6.237

6.  A nonlinear filter algorithm for the detection of jumps in patch-clamp data.

Authors:  R Schultze; S Draber
Journal:  J Membr Biol       Date:  1993-02       Impact factor: 1.843

7.  Ion-channel gating mechanisms: model identification and parameter estimation from single channel recordings.

Authors:  F G Ball; M S Sansom
Journal:  Proc R Soc Lond B Biol Sci       Date:  1989-05-22

8.  Activation of Shaker potassium channels. III. An activation gating model for wild-type and V2 mutant channels.

Authors:  N E Schoppa; F J Sigworth
Journal:  J Gen Physiol       Date:  1998-02       Impact factor: 4.086

9.  Ion Channels in the Xylem Parenchyma of Barley Roots (A Procedure to Isolate Protoplasts from This Tissue and a Patch-Clamp Exploration of Salt Passageways into Xylem Vessels.

Authors:  L. H. Wegner; K. Raschke
Journal:  Plant Physiol       Date:  1994-07       Impact factor: 8.340

10.  Hodgkin-Huxley analysis of whole-cell outward rectifying K(+)-currents in protoplasts from tobacco cell suspension cultures.

Authors:  B Van Duijn
Journal:  J Membr Biol       Date:  1993-02       Impact factor: 1.843

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  1 in total

1.  Inositol trisphosphate receptor and ion channel models based on single-channel data.

Authors:  Elan Gin; Larry E Wagner; David I Yule; James Sneyd
Journal:  Chaos       Date:  2009-09       Impact factor: 3.642

  1 in total

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