Literature DB >> 26368656

How to resolve microsecond current fluctuations in single ion channels: the power of beta distributions.

Indra Schroeder1.   

Abstract

A main ingredient for the understanding of structure/function correlates of ion channels is the quantitative description of single-channel gating and conductance. However, a wealth of information provided from fast current fluctuations beyond the temporal resolution of the recording system is often ignored, even though it is close to the time window accessible to molecular dynamics simulations. This kind of current fluctuations provide a special technical challenge, because individual opening/closing or blocking/unblocking events cannot be resolved, and the resulting averaging over undetected events decreases the single-channel current. Here, I briefly summarize the history of fast-current fluctuation analysis and focus on the so-called "beta distributions." This tool exploits characteristics of current fluctuation-induced excess noise on the current amplitude histograms to reconstruct the true single-channel current and kinetic parameters. A guideline for the analysis and recent applications demonstrate that a construction of theoretical beta distributions by Markov Model simulations offers maximum flexibility as compared to analytical solutions.

Entities:  

Keywords:  distribution; fast block; fast current fluctuations; fast gating; flickery gating; open-channel noise; rate constants; skewed amplitude histogram; true single-channel current; β

Mesh:

Substances:

Year:  2015        PMID: 26368656      PMCID: PMC4826091          DOI: 10.1080/19336950.2015.1083660

Source DB:  PubMed          Journal:  Channels (Austin)        ISSN: 1933-6950            Impact factor:   2.581


  110 in total

1.  Mechanism of voltage gating in potassium channels.

Authors:  Morten Ø Jensen; Vishwanath Jogini; David W Borhani; Abba E Leffler; Ron O Dror; David E Shaw
Journal:  Science       Date:  2012-04-13       Impact factor: 47.728

2.  Using a five-state model for fitting amplitude histograms from MaxiK channels: beta-distributions reveal more than expected.

Authors:  Indra Schroeder; Ulf-Peter Hansen
Journal:  Eur Biophys J       Date:  2009-07-21       Impact factor: 1.733

3.  Polyamine block of inwardly rectifying potassium channels.

Authors:  Harley T Kurata; Wayland W L Cheng; Colin G Nichols
Journal:  Methods Mol Biol       Date:  2011

4.  Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches.

Authors:  O P Hamill; A Marty; E Neher; B Sakmann; F J Sigworth
Journal:  Pflugers Arch       Date:  1981-08       Impact factor: 3.657

5.  Cyclic dinucleotides bind the C-linker of HCN4 to control channel cAMP responsiveness.

Authors:  Marco Lolicato; Annalisa Bucchi; Cristina Arrigoni; Stefano Zucca; Marco Nardini; Indra Schroeder; Katie Simmons; Marco Aquila; Dario DiFrancesco; Martino Bolognesi; Frank Schwede; Dmitry Kashin; Colin W G Fishwick; A Peter Johnson; Gerhard Thiel; Anna Moroni
Journal:  Nat Chem Biol       Date:  2014-04-28       Impact factor: 15.040

6.  Fast single-channel measurements resolve the blocking effect of Cs+ on the K+ channel.

Authors:  S Draber; U P Hansen
Journal:  Biophys J       Date:  1994-07       Impact factor: 4.033

7.  A potassium channel protein encoded by chlorella virus PBCV-1.

Authors:  B Plugge; S Gazzarrini; M Nelson; R Cerana; J L Van Etten; C Derst; D DiFrancesco; A Moroni; G Thiel
Journal:  Science       Date:  2000-03-03       Impact factor: 47.728

8.  Modulation of enrofloxacin binding in OmpF by Mg2+ as revealed by the analysis of fast flickering single-porin current.

Authors:  Annemarie Brauser; Indra Schroeder; Thomas Gutsmann; Cristian Cosentino; Anna Moroni; Ulf-Peter Hansen; Mathias Winterhalter
Journal:  J Gen Physiol       Date:  2012-06-11       Impact factor: 4.086

9.  Statistical properties of single sodium channels.

Authors:  R Horn; C A Vandenberg
Journal:  J Gen Physiol       Date:  1984-10       Impact factor: 4.086

10.  Ca2+ block and flickering both contribute to the negative slope of the IV curve in BK channels.

Authors:  Indra Schroeder; Gerhard Thiel; Ulf-Peter Hansen
Journal:  J Gen Physiol       Date:  2013-04       Impact factor: 4.086

View more
  8 in total

Review 1.  High bandwidth approaches in nanopore and ion channel recordings - A tutorial review.

Authors:  Andreas J W Hartel; Siddharth Shekar; Peijie Ong; Indra Schroeder; Gerhard Thiel; Kenneth L Shepard
Journal:  Anal Chim Acta       Date:  2019-01-25       Impact factor: 6.558

2.  Single-channel recordings of RyR1 at microsecond resolution in CMOS-suspended membranes.

Authors:  Andreas J W Hartel; Peijie Ong; Indra Schroeder; M Hunter Giese; Siddharth Shekar; Oliver B Clarke; Ran Zalk; Andrew R Marks; Wayne A Hendrickson; Kenneth L Shepard
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-05       Impact factor: 11.205

3.  Distinct lipid bilayer compositions have general and protein-specific effects on K+ channel function.

Authors:  Laura-Marie Winterstein; Kerri Kukovetz; Ulf-Peter Hansen; Indra Schroeder; James L Van Etten; Anna Moroni; Gerhard Thiel; Oliver Rauh
Journal:  J Gen Physiol       Date:  2021-02-01       Impact factor: 4.086

4.  Analysis of patchclamp recordings: model-free multiscale methods and software.

Authors:  Florian Pein; Benjamin Eltzner; Axel Munk
Journal:  Eur Biophys J       Date:  2021-04-09       Impact factor: 1.733

5.  Extended beta distributions open the access to fast gating in bilayer experiments-assigning the voltage-dependent gating to the selectivity filter.

Authors:  Oliver Rauh; Ulf-Peter Hansen; Sebastian Mach; Andreas J W Hartel; Kenneth L Shepard; Gerhard Thiel; Indra Schroeder
Journal:  FEBS Lett       Date:  2017-11-19       Impact factor: 4.124

6.  Site-specific ion occupation in the selectivity filter causes voltage-dependent gating in a viral K+ channel.

Authors:  O Rauh; U P Hansen; D D Scheub; G Thiel; I Schroeder
Journal:  Sci Rep       Date:  2018-07-10       Impact factor: 4.379

Review 7.  Comparing Current Noise in Biological and Solid-State Nanopores.

Authors:  Alessio Fragasso; Sonja Schmid; Cees Dekker
Journal:  ACS Nano       Date:  2020-02-17       Impact factor: 15.881

8.  Silicon Nitride-Based Micro-Apertures Coated with Parylene for the Investigation of Pore Proteins Fused in Free-Standing Lipid Bilayers.

Authors:  Tanzir Ahmed; Jayesh Arun Bafna; Roland Hemmler; Karsten Gall; Richard Wagner; Mathias Winterhalter; Michael J Vellekoop; Sander van den Driesche
Journal:  Membranes (Basel)       Date:  2022-03-09
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.