Literature DB >> 7667088

Matrix-assisted laser desorption/ionization mass spectrometry of immobilized duplex DNA probes.

K Tang1, D Fu, S Kötter, R J Cotter, C R Cantor, H Köster.   

Abstract

Matrix-assisted laser desorption/ionization (MALDI) time-of-flight (TOF) mass spectrometry was used to analyze short DNA duplex probes with one strand immobilized on solid supports (straptavidin-coated magnetic beads or controlled pore glass beads). Only the non-immobilized strand could be detected. Partial denaturation was found when the duplex probes were mixed with 3-hydroxypicolinic acid, ammonium citrate matrix. The strategy has several applications, such as fast DNA sequence analysis and DNA diagnostics.

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Year:  1995        PMID： 7667088      PMCID： PMC307169          DOI： 10.1093/nar/23.16.3126

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  19 in total

1.  Time-of-flight mass spectrometry for the structural analysis of biological molecules.

Authors:  R J Cotter
Journal:  Anal Chem       Date:  1992-11-01       Impact factor: 6.986

2.  Weighing naked proteins: practical, high-accuracy mass measurement of peptides and proteins.

Authors:  B T Chait; S B Kent
Journal:  Science       Date:  1992-09-25       Impact factor: 47.728

3.  Rapid, sensitive analysis of protein mixtures by mass spectrometry.

Authors:  R C Beavis; B T Chait
Journal:  Proc Natl Acad Sci U S A       Date:  1990-09       Impact factor: 11.205

4.  Matrix-assisted laser desorption/ionization mass spectrometry of biopolymers.

Authors:  F Hillenkamp; M Karas; R C Beavis; B T Chait
Journal:  Anal Chem       Date:  1991-12-15       Impact factor: 6.986

5.  DNA sequencing by hybridization: 100 bases read by a non-gel-based method.

Authors:  Z Strezoska; T Paunesku; D Radosavljević; I Labat; R Drmanac; R Crkvenjakov
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-15       Impact factor: 11.205

6.  Oligonucleotide hybridizations on glass supports: a novel linker for oligonucleotide synthesis and hybridization properties of oligonucleotides synthesised in situ.

Authors:  U Maskos; E M Southern
Journal:  Nucleic Acids Res       Date:  1992-04-11       Impact factor: 16.971

7.  [Determination of the nucleotide sequence of DNA using hybridization with oligonucleotides. A new method].

Authors:  Iu P Lysov; V L Florent'ev; A A Khorlin; K R Khrapko; V V Shik
Journal:  Dokl Akad Nauk SSSR       Date:  1988

8.  A novel method for nucleic acid sequence determination.

Authors:  W Bains; G C Smith
Journal:  J Theor Biol       Date:  1988-12-07       Impact factor: 2.691

9.  Detection of 500-nucleotide DNA by laser desorption mass spectrometry.

Authors:  K Tang; N I Taranenko; S L Allman; L Y Cháng; C H Chen
Journal:  Rapid Commun Mass Spectrom       Date:  1994-09       Impact factor: 2.419

10.  Polymer support oligonucleotide synthesis XVIII: use of beta-cyanoethyl-N,N-dialkylamino-/N-morpholino phosphoramidite of deoxynucleosides for the synthesis of DNA fragments simplifying deprotection and isolation of the final product.

Authors:  N D Sinha; J Biernat; J McManus; H Köster
Journal:  Nucleic Acids Res       Date:  1984-06-11       Impact factor: 16.971
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  18 in total

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Authors:  W P Bartolini; C M Bentzley; M V Johnston; B S Larsen
Journal:  J Am Soc Mass Spectrom       Date:  1999-06       Impact factor: 3.109

Review 2.  Automated mutation analysis.

Authors:  D Ravine
Journal:  J Inherit Metab Dis       Date:  1999-06       Impact factor: 4.982

3.  Solution composition and thermal denaturation for the production of single-stranded PCR amplicons: piperidine-induced destabilization of the DNA duplex?

Authors:  John B Mangrum; Jason W Flora; David C Muddiman
Journal:  J Am Soc Mass Spectrom       Date:  2002-03       Impact factor: 3.109

Review 4.  MALDI-TOF mass spectrometry: a versatile tool for high-performance DNA analysis.

Authors:  Christian Jurinke; Paul Oeth; Dirk van den Boom
Journal:  Mol Biotechnol       Date:  2004-02       Impact factor: 2.695

5.  Technologies in the Whole-Genome Age: MALDI-TOF-Based Genotyping.

Authors:  Nicolas Vogel; Katrin Schiebel; Andreas Humeny
Journal:  Transfus Med Hemother       Date:  2009-07-10       Impact factor: 3.747

6.  Molecular Diagnostics in Transfusion Medicine: In Capillary, on a Chip, in Silico, or in Flight?

Authors:  Henk S P Garritsen; Alex Xiu-Cheng Fan; Daniela Lenz; Horst Hannig; Xiao Yan Zhong; Robert Geffers; Werner Lindenmaier; Kurt E J Dittmar; Bernhard Wörmann
Journal:  Transfus Med Hemother       Date:  2009-05-18       Impact factor: 3.747

7.  Mechanisms by which common variants in the TCF7L2 gene increase risk of type 2 diabetes.

Authors:  Valeriya Lyssenko; Roberto Lupi; Piero Marchetti; Silvia Del Guerra; Marju Orho-Melander; Peter Almgren; Marketa Sjögren; Charlotte Ling; Karl-Fredrik Eriksson; Asa-Linda Lethagen; Rita Mancarella; Göran Berglund; Tiinamaija Tuomi; Peter Nilsson; Stefano Del Prato; Leif Groop
Journal:  J Clin Invest       Date:  2007-08       Impact factor: 14.808

8.  On the replication of genetic associations: timing can be everything!

Authors:  Jessica Lasky-Su; Helen N Lyon; Valur Emilsson; Iris M Heid; Cliona Molony; Benjamin A Raby; Ross Lazarus; Barbara Klanderman; Manuel E Soto-Quiros; Lydiana Avila; Edwin K Silverman; Gudmar Thorleifsson; Unnur Thorsteinsdottir; Florian Kronenberg; Caren Vollmert; Thomas Illig; Caroline S Fox; Daniel Levy; Nan Laird; Xiao Ding; Matt B McQueen; Johannah Butler; Kristin Ardlie; Constantina Papoutsakis; George Dedoussis; Christopher J O'Donnell; H-Erich Wichmann; Juan C Celedón; Eric Schadt; Joel Hirschhorn; Scott T Weiss; Kari Stefansson; Christoph Lange
Journal:  Am J Hum Genet       Date:  2008-04       Impact factor: 11.025

9.  Sequencing double-stranded DNA by strand displacement.

Authors:  D J Fu; H Köster; C L Smith; C R Cantor
Journal:  Nucleic Acids Res       Date:  1997-02-01       Impact factor: 16.971

10.  Cross-talk-free dual-color fluorescence cross-correlation spectroscopy for the study of enzyme activity.

Authors:  Wonbae Lee; Yong-Ill Lee; Jeonghoon Lee; Lloyd M Davis; Prescott Deininger; Steven A Soper
Journal:  Anal Chem       Date:  2010-02-15       Impact factor: 6.986
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