Literature DB >> 21113259

Molecular Diagnostics in Transfusion Medicine: In Capillary, on a Chip, in Silico, or in Flight?

Henk S P Garritsen1, Alex Xiu-Cheng Fan, Daniela Lenz, Horst Hannig, Xiao Yan Zhong, Robert Geffers, Werner Lindenmaier, Kurt E J Dittmar, Bernhard Wörmann.   

Abstract

Serology, defined as antibody-based diagnostics, has been regarded as the diagnostic gold standard in transfusion medicine. Nowadays however the impact of molecular diagnostics in transfusion medicine is rapidly growing. Molecular diagnostics can improve tissue typing (HLA typing), increase safety of blood products (NAT testing of infectious diseases), and enable blood group typing in difficult situations (after transfusion of blood products or prenatal non-invasive RhD typing). Most of the molecular testing involves the determination of the presence of single nucleotide polymorphisms (SNPs). Antigens (e.g. blood group antigens) mostly result from single nucleotide differences in critical positions. However, most blood group systems cannot be determined by looking at a single SNP. To identify members of a blood group system a number of critical SNPs have to be taken into account. The platforms which are currently used to perform molecular diagnostics are mostly gel-based, requiring time-consuming multiple manual steps. To implement molecular methods in transfusion medicine in the future the development of higher-throughput SNP genotyping non-gel-based platforms which allow a rapid, cost-effective screening are essential. Because of its potential for automation, high throughput and cost effectiveness the special focus of this paper is a relative new technique: SNP genotyping by MALDI-TOF MS analysis.

Entities:  

Year:  2009        PMID: 21113259      PMCID: PMC2980526          DOI: 10.1159/000217719

Source DB:  PubMed          Journal:  Transfus Med Hemother        ISSN: 1660-3796            Impact factor:   3.747


  35 in total

1.  Multiplex automated primer extension analysis: simultaneous genotyping of several polymorphisms.

Authors:  N M Makridakis; J K Reichardt
Journal:  Biotechniques       Date:  2001-12       Impact factor: 1.993

2.  A comparison between SNaPshot, pyrosequencing, and biplex invader SNP genotyping methods: accuracy, cost, and throughput.

Authors:  Nirupma Pati; Valerie Schowinsky; Obrad Kokanovic; Victoria Magnuson; Soumitra Ghosh
Journal:  J Biochem Biophys Methods       Date:  2004-07-30

3.  Y-SNP-genotyping - a new approach in forensic analysis.

Authors:  R Lessig; M Zoledziewska; K Fahr; J Edelmann; M Kostrzewa; T Dobosz; W J Kleemann
Journal:  Forensic Sci Int       Date:  2004-11-23       Impact factor: 2.395

4.  Genotyping fetal paternally inherited SNPs by MALDI-TOF MS using cell-free fetal DNA in maternal plasma: influence of size fractionation.

Authors:  Ying Li; Friedel Wenzel; Wolfgang Holzgreve; Sinuhe Hahn
Journal:  Electrophoresis       Date:  2006-10       Impact factor: 3.535

Review 5.  Recent developments in the detection of fetal single gene differences in maternal plasma and the role of size fractionation.

Authors:  Ying Li; Sinuhe Hahn; Wolfgang Holzgreve
Journal:  Ann N Y Acad Sci       Date:  2006-12       Impact factor: 5.691

6.  Multicenter trials need to use the same assay for hepatitis C virus viral load determination.

Authors:  Syria Laperche; Françoise Bouchardeau; Vincent Thibault; Bruno Pozzetto; Sophie Vallet; Arielle R Rosenberg; Anne-Marie Roque-Afonso; Michèle Gassin; Françoise Stoll-Keller; Pascale Trimoulet; Elyanne Gault; Bruno Chanzy; Bernard Mercier; Michel Branger; Jean-Michel Pawlotsky; Cécile Henquell; Françoise Lunel; Catherine Gaudy-Graffin; Sophie Alain; Marie-Laure Chaix; Gilles Duverlie; Jacques Izopet; Jean-Jacques Lefrère
Journal:  J Clin Microbiol       Date:  2007-10-03       Impact factor: 5.948

7.  Noninvasive genotyping fetal Kell blood group (KEL1) using cell-free fetal DNA in maternal plasma by MALDI-TOF mass spectrometry.

Authors:  Ying Li; Kirstin Finning; Geoff Daniels; Sinuhe Hahn; Xiaoyan Zhong; Wolfgang Holzgreve
Journal:  Prenat Diagn       Date:  2008-03       Impact factor: 3.050

8.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

9.  Large scale blood group genotyping.

Authors:  Neil D Avent
Journal:  Transfus Clin Biol       Date:  2007-05-23       Impact factor: 1.406

10.  Rapid determination of platelet alloantigen genotypes by polymerase chain reaction using allele-specific primers.

Authors:  B Skogen; D B Bellissimo; M J Hessner; S Santoso; R H Aster; P J Newman; J G McFarland
Journal:  Transfusion       Date:  1994 Nov-Dec       Impact factor: 3.157

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  2 in total

1.  Will Genotyping Replace Serology in Future Routine Blood Grouping? - Opinion 5.

Authors:  C Ellen van der Schoot; Barbera Veldhuisen; Masja de Haas
Journal:  Transfus Med Hemother       Date:  2009-05-28       Impact factor: 3.747

2.  Molecular Blood Group Diagnostics.

Authors:  Christoph Gassner
Journal:  Transfus Med Hemother       Date:  2009       Impact factor: 3.747

  2 in total

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