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Literature DB >> 6694897

Delila system tools.

T D Schneider, G D Stormo, M A Yarus, L Gold.

Abstract

We introduce three new computer programs and associated tools of the Delila nucleic-acid sequence analysis system. The first program, Module, allows rapid transportation of new sequence analysis tools between scientists using different computers. The second program, DBpull, allows efficient access to the large nucleic-acid sequence databases being collected in the United States and Europe. The third program, Encode, provides a flexible way to process sequence data for analysis by other programs.

Mesh：

Substances：
Nucleic Acids

Year: 1984 PMID： 6694897 PMCID： PMC320990 DOI： 10.1093/nar/12.1part1.129

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

6 in total

1. rII cistrons of bacteriophage T4. DNA sequence around the intercistronic divide and positions of genetic landmarks.

Authors: D Pribnow; D C Sigurdson; L Gold; B S Singer; C Napoli; J Brosius; T J Dull; H F Noller
Journal: J Mol Biol Date: 1981-07-05 Impact factor: 5.469

2. Characterization of translational initiation sites in E. coli.

Authors: G D Stormo; T D Schneider; L M Gold
Journal: Nucleic Acids Res Date: 1982-05-11 Impact factor: 16.971

3. Use of the 'Perceptron' algorithm to distinguish translational initiation sites in E. coli.

Authors: G D Stormo; T D Schneider; L Gold; A Ehrenfeucht
Journal: Nucleic Acids Res Date: 1982-05-11 Impact factor: 16.971

4. A design for computer nucleic-acid-sequence storage, retrieval, and manipulation.

Authors: T D Schneider; G D Stormo; J S Haemer; L Gold
Journal: Nucleic Acids Res Date: 1982-05-11 Impact factor: 16.971

5. Codon catalog usage is a genome strategy modulated for gene expressivity.

Authors: R Grantham; C Gautier; M Gouy; M Jacobzone; R Mercier
Journal: Nucleic Acids Res Date: 1981-01-10 Impact factor: 16.971

6. The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.

Authors: J Shine; L Dalgarno
Journal: Proc Natl Acad Sci U S A Date: 1974-04 Impact factor: 11.205

6 in total

26 in total

1. Molecular flip-flops formed by overlapping Fis sites.

Authors: Paul N Hengen; Ilya G Lyakhov; Lisa E Stewart; Thomas D Schneider
Journal: Nucleic Acids Res Date: 2003-11-15 Impact factor: 16.971

2. Improved models for transcription factor binding site identification using nonindependent interactions.

Authors: Yue Zhao; Shuxiang Ruan; Manishi Pandey; Gary D Stormo
Journal: Genetics Date: 2012-04-13 Impact factor: 4.562

3. Structural analysis of two genes encoding divergent forms of yeast cytochrome c oxidase subunit V.

Authors: M G Cumsky; C E Trueblood; C Ko; R O Poyton
Journal: Mol Cell Biol Date: 1987-10 Impact factor: 4.272

4. High information conservation implies that at least three proteins bind independently to F plasmid incD repeats.

Authors: N D Herman; T D Schneider
Journal: J Bacteriol Date: 1992-06 Impact factor: 3.490

5. Quantitative analysis of the relationship between nucleotide sequence and functional activity.

Authors: G D Stormo; T D Schneider; L Gold
Journal: Nucleic Acids Res Date: 1986-08-26 Impact factor: 16.971

6. Twenty Years of Delila and Molecular Information Theory: The Altenberg-Austin Workshop in Theoretical Biology Biological Information, Beyond Metaphor: Causality, Explanation, and Unification Altenberg, Austria, 11-14 July 2002.

Authors: Thomas D Schneider
Journal: Biol Theory Date: 2006