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Literature DB >> 7099972

A design for computer nucleic-acid-sequence storage, retrieval, and manipulation.

T D Schneider, G D Stormo, J S Haemer, L Gold.

Abstract

We have designed and built a data-base system for the storage of nucleic-acid sequences. The system consists of a data base ("the library") and software that manages and provides access to that data base ("the Librarian").

Mesh：

Year: 1982 PMID： 7099972 PMCID： PMC320671 DOI： 10.1093/nar/10.9.3013

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

40 in total

1. Hybridization of maize chloroplast DNA with transfer ribonucleic acids.

Authors: L A Haff; L Bogorad
Journal: Biochemistry Date: 1976-09-07 Impact factor: 3.162

2. Computer analysis of nucleic acids and proteins.

Authors: C L Queen; L J Korn
Journal: Methods Enzymol Date: 1980 Impact factor: 1.600

3. rII cistrons of bacteriophage T4. DNA sequence around the intercistronic divide and positions of genetic landmarks.

Authors: D Pribnow; D C Sigurdson; L Gold; B S Singer; C Napoli; J Brosius; T J Dull; H F Noller
Journal: J Mol Biol Date: 1981-07-05 Impact factor: 5.469

4. Sequencing of 16S--23S spacer in a ribosomal RNA operon of Euglena gracilis chloroplast DNA reveals two tRNA genes.

Authors: L Graf; H Kössel; E Stutz
Journal: Nature Date: 1980-08-28 Impact factor: 49.962

5. Cytoplasmic site synthesis of chloroplast aminoacyl-tRNA synthetases in Euglena gracilis.

Authors: B Parthier
Journal: FEBS Lett Date: 1973-12-15 Impact factor: 4.124

6. Primary structure of three leucine transfer RNAs from bean chloroplast.

Authors: M L Osorio-Almeida; P Guillemaut; G Keith; J Canaday; J H Weil
Journal: Biochem Biophys Res Commun Date: 1980-01-15 Impact factor: 3.575

7. Endonuclease recognition sites mapped on Zea mays chloroplast DNA.

Authors: J R Bedbrook; L Bogorad
Journal: Proc Natl Acad Sci U S A Date: 1976-12 Impact factor: 11.205

8. Maize chloroplast DNA fragment encoding the large subunit of ribulosebisphosphate carboxylase.

Authors: D M Coen; J R Bedbrook; L Bogorad; A Rich
Journal: Proc Natl Acad Sci U S A Date: 1977-12 Impact factor: 11.205

9. Nucleotide sequence of genes coding for tRNAPhe and tRNATyr from a repeating unit of X. laevis DNA.

Authors: F Müller; S G Clarkson
Journal: Cell Date: 1980-02 Impact factor: 41.582

10. The Zea mays mitochondrial gene coding cytochrome oxidase subunit II has an intervening sequence and does not contain TGA codons.

Authors: T D Fox; C J Leaver
Journal: Cell Date: 1981-11 Impact factor: 41.582

25 in total

1. Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation.

Authors: T D Schneider
Journal: Nucleic Acids Res Date: 2001-12-01 Impact factor: 16.971

2. Molecular flip-flops formed by overlapping Fis sites.

Authors: Paul N Hengen; Ilya G Lyakhov; Lisa E Stewart; Thomas D Schneider
Journal: Nucleic Acids Res Date: 2003-11-15 Impact factor: 16.971

3. WebLogo: a sequence logo generator.

Authors: Gavin E Crooks; Gary Hon; John-Marc Chandonia; Steven E Brenner
Journal: Genome Res Date: 2004-06 Impact factor: 9.043

4. High information conservation implies that at least three proteins bind independently to F plasmid incD repeats.

Authors: N D Herman; T D Schneider
Journal: J Bacteriol Date: 1992-06 Impact factor: 3.490

5. Quantitative analysis of the relationship between nucleotide sequence and functional activity.

Authors: G D Stormo; T D Schneider; L Gold
Journal: Nucleic Acids Res Date: 1986-08-26 Impact factor: 16.971

6. Twenty Years of Delila and Molecular Information Theory: The Altenberg-Austin Workshop in Theoretical Biology Biological Information, Beyond Metaphor: Causality, Explanation, and Unification Altenberg, Austria, 11-14 July 2002.

Authors: Thomas D Schneider
Journal: Biol Theory Date: 2006

10. Multiple splice defects in ABCA1 cause low HDL-C in a family with hypoalphalipoproteinemia and premature coronary disease.

Authors: Jeffrey Rhyne; Myrna M Mantaring; David F Gardner; Michael Miller
Journal: BMC Med Genet Date: 2009-01-08 Impact factor: 2.103