Literature DB >> 7208352

Codon catalog usage is a genome strategy modulated for gene expressivity.

R Grantham, C Gautier, M Gouy, M Jacobzone, R Mercier.   

Abstract

The nucleic acid sequence bank now contains 161 mRNAs, 43 new genes are added. One sequence, that of B. mori fibroin, is dropped due to uncertainty on the starting point for translation. Frequencies of all codons are given for each gene added and for each genome type in the total bank. A new series of correspondence analyses on codon use is presented, substantiating the genome hypothesis. Internal regulation of mRNA expression by different third base choices between quartet and duet codons is proposed for bacterial genes.

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Year:  1981        PMID： 7208352      PMCID： PMC326682          DOI： 10.1093/nar/9.1.213-b

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  39 in total

1.  Viral, prokaryote and eukaryote genes contrasted by mRNA sequence indexes.

Authors:  R Grantham
Journal:  FEBS Lett       Date:  1978-11-01       Impact factor: 4.124

Review 2.  Prediction of pairing schemes in RNA molecules-loop contributions and energy of wobble and non-wobble pairs.

Authors:  J Ninio
Journal:  Biochimie       Date:  1979       Impact factor: 4.079

3.  Evolution of two major chorion multigene families as inferred from cloned cDNA and protein sequences.

Authors:  C W Jones; N Rosenthal; G C Rodakis; F C Kafatos
Journal:  Cell       Date:  1979-12       Impact factor: 41.582

4.  The preferential codon usages in variable and constant regions of immunoglobulin genes are quite distinct from each other.

Authors:  T Miyata; H Hayashida; T Yasunaga; M Hasegawa
Journal:  Nucleic Acids Res       Date:  1979-12-20       Impact factor: 16.971

5.  Calculation of interaction energy between triplets in the RNA 11 configuration.

Authors:  P Claverie
Journal:  J Mol Biol       Date:  1971-02-28       Impact factor: 5.469

Review 6.  Codon catalog usage and the genome hypothesis.

Authors:  R Grantham; C Gautier; M Gouy; R Mercier; A Pavé
Journal:  Nucleic Acids Res       Date:  1980-01-11       Impact factor: 16.971

7.  Nucleotide sequence of a collagen cDNA-fragment coding for the carboxyl end of pro alpha 1(I)-chains.

Authors:  A M Showalter; D M Pesciotta; E F Eikenberry; T Yamamoto; I Pastan; B DeCrombrugghe; P P Fietzek; B R Olsen
Journal:  FEBS Lett       Date:  1980-02-25       Impact factor: 4.124

8.  BK virus DNA: complete nucleotide sequence of a human tumor virus.

Authors:  R C Yang; R Wu
Journal:  Science       Date:  1979-10-26       Impact factor: 47.728

9.  dnaG (primase)-dependent origins of DNA replication. Nucleotide sequences of the negative strand initiation sites of bacteriophages St-1, phi K, and alpha 3.

Authors:  J Sims; D Capon; D Dressler
Journal:  J Biol Chem       Date:  1979-12-25       Impact factor: 5.157

10.  DNA sequence analysis of the transposon Tn3: three genes and three sites involved in transposition of Tn3.

Authors:  F Heffron; B J McCarthy; H Ohtsubo; E Ohtsubo
Journal:  Cell       Date:  1979-12       Impact factor: 41.582
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  312 in total

1.  Comparison of intron-containing and intron-lacking human genes elucidates putative exonic splicing enhancers.

Authors:  A Fedorov; S Saxonov; L Fedorova; I Daizadeh
Journal:  Nucleic Acids Res       Date:  2001-04-01       Impact factor: 16.971

2.  Regularities of context-dependent codon bias in eukaryotic genes.

Authors:  Alexei Fedorov; Serge Saxonov; Walter Gilbert
Journal:  Nucleic Acids Res       Date:  2002-03-01       Impact factor: 16.971

3.  A survey of codon and amino acid frequency bias in microbial genomes focusing on translational efficiency.

Authors:  Rainer Merkl
Journal:  J Mol Evol       Date:  2003-10       Impact factor: 2.395

4.  Evolutionary implications of microbial genome tetranucleotide frequency biases.

Authors:  David T Pride; Richard J Meinersmann; Trudy M Wassenaar; Martin J Blaser
Journal:  Genome Res       Date:  2003-02       Impact factor: 9.043

5.  Nucleotide sequences and operon structure of plasmid-borne genes mediating uptake and utilization of raffinose in Escherichia coli.

Authors:  C Aslanidis; K Schmid; R Schmitt
Journal:  J Bacteriol       Date:  1989-12       Impact factor: 3.490

6.  Gene expression, intron density, and splice site strength in Drosophila and Caenorhabditis.

Authors:  Marie E Fahey; Desmond G Higgins
Journal:  J Mol Evol       Date:  2007-09-01       Impact factor: 2.395

7.  Nucleotide sequence of Klebsiella pneumoniae lac genes.

Authors:  W E Buvinger; M Riley
Journal:  J Bacteriol       Date:  1985-09       Impact factor: 3.490

8.  Functional conservation near the 3' end of eukaryotic small subunit RNA: photochemical crosslinking of P site-bound acetylvalyl-tRNA to 18S RNA of yeast ribosomes.

Authors:  J Ofengand; P Gornicki; K Chakraburtty; K Nurse
Journal:  Proc Natl Acad Sci U S A       Date:  1982-05       Impact factor: 11.205

9.  Identification and nucleotide sequence of the Leptospira biflexa serovar patoc trpE and trpG genes.

Authors:  D B Yelton; S L Peng
Journal:  J Bacteriol       Date:  1989-04       Impact factor: 3.490

10.  Cloning and sequencing of a Moraxella bovis pilin gene.

Authors:  C F Marrs; G Schoolnik; J M Koomey; J Hardy; J Rothbard; S Falkow
Journal:  J Bacteriol       Date:  1985-07       Impact factor: 3.490
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