Literature DB >> 7048258

Characterization of translational initiation sites in E. coli.

G D Stormo, T D Schneider, L M Gold.   

Abstract

We characterize the Shine and Dalgarno sequence of 124 known gene beginnings. This information is used to make "rules" which help distinguish gene beginning from other sites in a library of over 78,000 bases of mRNA. Gene beginnings are found to have information besides the initiation codon and Shine and Dalgarno sequence which can be used to make better "rules".

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Year:  1982        PMID： 7048258      PMCID： PMC320669          DOI： 10.1093/nar/10.9.2971

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  69 in total

1.  Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes.

Authors:  T Ikemura
Journal:  J Mol Biol       Date:  1981-02-15       Impact factor: 5.469

2.  The araC regulatory gene mRNA contains a leader sequence.

Authors:  L G Cass; A H Horwitz; C G Miyada; L Greenfield; G Wilcox
Journal:  Mol Gen Genet       Date:  1980

Review 3.  Translational initiation in prokaryotes.

Authors:  L Gold; D Pribnow; T Schneider; S Shinedling; B S Singer; G Stormo
Journal:  Annu Rev Microbiol       Date:  1981       Impact factor: 15.500

4.  Mutations that affect lamB gene expression at a posttranscriptional level.

Authors:  M Schwartz; M Roa; M Débarbouillé
Journal:  Proc Natl Acad Sci U S A       Date:  1981-05       Impact factor: 11.205

5.  Nucleotide sequences of the trpG regions of Escherichia coli, Shigella dysenteriae, Salmonella typhimurium and Serratia marcescens.

Authors:  B P Nichols; G F Miozzari; M van Cleemput; G N Bennett; C Yanofsky
Journal:  J Mol Biol       Date:  1980-10-05       Impact factor: 5.469

6.  The ribosome binding sites recognized by E. coli ribosomes have regions with signal character in both the leader and protein coding segments.

Authors:  G F Scherer; M D Walkinshaw; S Arnott; D J Morré
Journal:  Nucleic Acids Res       Date:  1980-09-11       Impact factor: 16.971

7.  Nucleotide sequence of the trpB gene in Escherichia coli and Salmonella typhimurium.

Authors:  I P Crawford; B P Nichols; C Yanofsky
Journal:  J Mol Biol       Date:  1980-10-05       Impact factor: 5.469

8.  Nucleotide sequence from the genetic left end of bacteriophage T7 DNA to the beginning of gene 4.

Authors:  J J Dunn; F W Studier
Journal:  J Mol Biol       Date:  1981-06-05       Impact factor: 5.469

9.  Increased error frequency of DNA polymerases from senescent human fibroblasts.

Authors:  V Murray; R Holliday
Journal:  J Mol Biol       Date:  1981-02-15       Impact factor: 5.469

10.  Amino acid sequence homology between cholera toxin and Escherichia coli heat-labile toxin.

Authors:  W S Dallas; S Falkow
Journal:  Nature       Date:  1980-12-04       Impact factor: 49.962
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  271 in total

1.  Vibrio cholerae phage K139: complete genome sequence and comparative genomics of related phages.

Authors:  Dagmar Kapfhammer; Julia Blass; Stefan Evers; Joachim Reidl
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

2.  Evidence for the frequent use of TTG as the translation initiation codon of mitochondrial protein genes in the nematodes, Ascaris suum and Caenorhabditis elegans.

Authors:  R Okimoto; J L Macfarlane; D R Wolstenholme
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

3.  Parathion hydrolase specified by the Flavobacterium opd gene: relationship between the gene and protein.

Authors:  W W Mulbry; J S Karns
Journal:  J Bacteriol       Date:  1989-12       Impact factor: 3.490

4.  Nucleotide sequence and expression of a Streptomyces griseosporeus proteinaceous alpha-amylase inhibitor (HaimII) gene.

Authors:  H Nagaso; S Saito; H Saito; H Takahashi
Journal:  J Bacteriol       Date:  1988-10       Impact factor: 3.490

5.  Gene density over the chromosome of Escherichia coli: frequency distribution, spatial clustering, and symmetry.

Authors:  J Jurka; M A Savageau
Journal:  J Bacteriol       Date:  1985-08       Impact factor: 3.490

6.  Cloning of a novel aldo-keto reductase gene from Klebsiella sp. strain F51-1-2 and its functional expression in Escherichia coli.

Authors:  Hong Jiang; Chao Yang; Hong Qu; Zheng Liu; Q S Fu; Chuanling Qiao
Journal:  Appl Environ Microbiol       Date:  2007-06-15       Impact factor: 4.792

7.  Identification of a gene linked to Rhizobium meliloti ntrA whose product is homologous to a family to ATP-binding proteins.

Authors:  L M Albright; C W Ronson; B T Nixon; F M Ausubel
Journal:  J Bacteriol       Date:  1989-04       Impact factor: 3.490

8.  Open reading frame 5 (ORF5), encoding a ferredoxinlike protein, and nifQ are cotranscribed with nifE, nifN, nifX, and ORF4 in Rhodobacter capsulatus.

Authors:  C Moreno-Vivian; S Hennecke; A Pühler; W Klipp
Journal:  J Bacteriol       Date:  1989-05       Impact factor: 3.490

9.  In vitro template activity of 0.3 mRNA from wild type and initiation mutants of bacteriophage T7.

Authors:  H Ohsawa; P Herrlich; C Gualerzi
Journal:  Mol Gen Genet       Date:  1984

10.  Nucleotide sequence encoding the iron-sulphur protein subunit of the succinate dehydrogenase of Escherichia coli.

Authors:  M G Darlison; J R Guest
Journal:  Biochem J       Date:  1984-10-15       Impact factor: 3.857
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