Literature DB >> 6546440

Microcomputer programs for back translation of protein to DNA sequences and analysis of ambiguous DNA sequences.

D W Mount, B Conrad.   

Abstract

Three computer programs are described which may be used to translate a DNA sequence into a protein sequence, back translate the protein sequence into an ambiguous DNA sequence, and then do pattern searching in the ambiguous sequence. The programs are written in the C programming language, have been compiled to run on a microcomputer under the CP/M 80 operating system, and may be copied in binary format through a modem. They are also to become available for the IBM/PC.

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Year:  1984        PMID： 6546440      PMCID： PMC321096          DOI： 10.1093/nar/12.1part2.819

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  7 in total

1.  Computer analysis of nucleic acid regulatory sequences.

Authors:  L J Korn; C L Queen; M N Wegman
Journal:  Proc Natl Acad Sci U S A       Date:  1977-10       Impact factor: 11.205

2.  A strategy of DNA sequencing employing computer programs.

Authors:  R Staden
Journal:  Nucleic Acids Res       Date:  1979-06-11       Impact factor: 16.971

3.  A conversational system for the computer analysis of nucleic acid sequences.

Authors:  R Sege; D Söll; F H Ruddle; C Queen
Journal:  Nucleic Acids Res       Date:  1981-01-24       Impact factor: 16.971

4.  Computer programs for nucleic acid sequence manipulation.

Authors:  R M Blumenthal; P J Rice; R J Roberts
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

5.  Steps toward computer analysis of nucleotide sequences.

Authors:  T R Gingeras; R J Roberts
Journal:  Science       Date:  1980-09-19       Impact factor: 47.728

6.  Codon preference and its use in identifying protein coding regions in long DNA sequences.

Authors:  R Staden; A D McLachlan
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

7.  Sequence data handling by computer.

Authors:  R Staden
Journal:  Nucleic Acids Res       Date:  1977-11       Impact factor: 16.971
  7 in total
  5 in total

1.  The molecular biology computer research resource.

Authors:  T F Smith; K Gruskin; S Tolman; D Faulkner
Journal:  Nucleic Acids Res       Date:  1986-01-10       Impact factor: 16.971

2.  In vitro expression of two proteins from overlapping reading frames in a eukaryotic DNA sequence.

Authors:  J M Jankowski; S A Krawetz; E Walczyk; G H Dixon
Journal:  J Mol Evol       Date:  1986       Impact factor: 2.395

3.  A collection of programs for nucleic acid and protein analysis, written in FORTRAN 77 for IBM-PC compatible microcomputers.

Authors:  B F Lang; G Burger
Journal:  Nucleic Acids Res       Date:  1986-01-10       Impact factor: 16.971

4.  Structure of the Marek's disease virus BamHI-H gene family: genes of putative importance for tumor induction.

Authors:  G Bradley; M Hayashi; G Lancz; A Tanaka; M Nonoyama
Journal:  J Virol       Date:  1989-06       Impact factor: 5.103

5.  Optimal encoding rules for synthetic genes: the need for a community effort.

Authors:  Gang Wu; Laura Dress; Stephen J Freeland
Journal:  Mol Syst Biol       Date:  2007-09-18       Impact factor: 11.429
  5 in total

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