Literature DB >> 3753781

A collection of programs for nucleic acid and protein analysis, written in FORTRAN 77 for IBM-PC compatible microcomputers.

B F Lang, G Burger.   

Abstract

We have developed a collection of programs for manipulation and analysis of nucleotide and protein sequences. The package was written in Fortran 77 on a Sirius1/Victor microcomputer which can be easily implemented on a large variety of other computers. Some of the programs have already been adapted for use on a Vax 11. Our aim was to develop programs consisting of small, comprehensible and well documented units that have very fast execution times and are comfortably interactive. The package is therefore suitable for individual modifications, even with little understanding of computer languages.

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Year:  1986        PMID: 3753781      PMCID: PMC339430          DOI: 10.1093/nar/14.1.455

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  9 in total

1.  Globin mRNA sequences: analysis of base pairing and evolutionary implications.

Authors:  W Salser
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1978

2.  Analysis of large nucleic acid dot matrices on small computers.

Authors:  S E Zweig
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

3.  Some simple computational methods to improve the folding of large RNAs.

Authors:  A B Jacobson; L Good; J Simonetti; M Zuker
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

4.  Microcomputer programs for back translation of protein to DNA sequences and analysis of ambiguous DNA sequences.

Authors:  D W Mount; B Conrad
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

5.  A comprehensive set of sequence analysis programs for the VAX.

Authors:  J Devereux; P Haeberli; O Smithies
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

6.  A simple method for displaying the hydropathic character of a protein.

Authors:  J Kyte; R F Doolittle
Journal:  J Mol Biol       Date:  1982-05-05       Impact factor: 5.469

7.  Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins.

Authors:  J Garnier; D J Osguthorpe; B Robson
Journal:  J Mol Biol       Date:  1978-03-25       Impact factor: 5.469

8.  Assembly of the mitochondrial membrane system. DNA sequence and organization of the cytochrome b gene in Saccharomyces cerevisiae D273-10B.

Authors:  F G Nobrega; A Tzagoloff
Journal:  J Biol Chem       Date:  1980-10-25       Impact factor: 5.157

9.  The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans.

Authors:  B F Lang
Journal:  EMBO J       Date:  1984-09       Impact factor: 11.598

  9 in total
  15 in total

1.  Phylogenetic relationships of linear, protein-primed replicating genomes.

Authors:  M Rohe; J Schründer; P Tudzynski; F Meinhardt
Journal:  Curr Genet       Date:  1992-02       Impact factor: 3.886

2.  Comparative analysis of gender-associated complete mitochondrial genomes in marine mussels (Mytilus spp.).

Authors:  Sophie Breton; Gertraud Burger; Donald T Stewart; Pierre U Blier
Journal:  Genetics       Date:  2005-12-01       Impact factor: 4.562

3.  In organello replication and viral affinity of linear, extrachromosomal DNA of the ascomycete Ascobolus immersus.

Authors:  F Kempken; F Meinhardt; K Esser
Journal:  Mol Gen Genet       Date:  1989-09

4.  The complete mitochondrial DNA sequence of Scenedesmus obliquus reflects an intermediate stage in the evolution of the green algal mitochondrial genome.

Authors:  A M Nedelcu; R W Lee; C Lemieux; M W Gray; G Burger
Journal:  Genome Res       Date:  2000-06       Impact factor: 9.043

5.  Extrachromosomal plasmids in the plant pathogenic fungus Rhizoctonia solani.

Authors:  S H Jabaji-Hare; G Burger; L Forget; B F Lang
Journal:  Curr Genet       Date:  1994-05       Impact factor: 3.886

6.  Mitochondrial genes in the colourless alga Prototheca wickerhamii resemble plant genes in their exons but fungal genes in their introns.

Authors:  G Wolff; G Burger; B F Lang; U Kück
Journal:  Nucleic Acids Res       Date:  1993-02-11       Impact factor: 16.971

7.  Repetitive sequences in the genome of Anemone blanda: identification of tandem arrays and of dispersed repeats.

Authors:  S Hagemann; B Scheer; D Schweizer
Journal:  Chromosoma       Date:  1993-05       Impact factor: 4.316

8.  nirA, the pathway-specific regulatory gene of nitrate assimilation in Aspergillus nidulans, encodes a putative GAL4-type zinc finger protein and contains four introns in highly conserved regions.

Authors:  G Burger; J Strauss; C Scazzocchio; B F Lang
Journal:  Mol Cell Biol       Date:  1991-11       Impact factor: 4.272

9.  The NADH-dehydrogenase subunit 5 gene in Oenothera mitochondria contains two introns and is co-transcribed with the 5 S rRNA gene.

Authors:  B Wissinger; R Hiesel; W Schuster; A Brennicke
Journal:  Mol Gen Genet       Date:  1988-04

10.  Identification, cloning, and characterization of rcsF, a new regulator gene for exopolysaccharide synthesis that suppresses the division mutation ftsZ84 in Escherichia coli K-12.

Authors:  F G Gervais; G R Drapeau
Journal:  J Bacteriol       Date:  1992-12       Impact factor: 3.490

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