Literature DB >> 6546417

Simplified computer programs for search of homology within nucleotide sequences.

M Kröger, A Kröger-Block.   

Abstract

Four new computer programs for search of homology within nucleotide sequences are presented. The main scope of the program design is flexibility, independence of sequence length and the capability to be used by any molecular biologist without any prior computer experience. The programs offer a linear search, a search for maximal identity, an alignment along a given sequence and a search based on homology within the amino acid coding capacity of nucleotide sequences. The language is Fortran V. Copies are available on request.

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Year:  1984        PMID: 6546417      PMCID: PMC320996          DOI: 10.1093/nar/12.1part1.193

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  11 in total

1.  Improvements to a program for DNA analysis: a procedure to find homologies among many sequences.

Authors:  C Queen; M N Wegman; L J Korn
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

2.  Efficient algorithms for folding and comparing nucleic acid sequences.

Authors:  J P Dumas; J Ninio
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

3.  A flexible new computer program for handling DNA sequence data.

Authors:  M Kröger; A Kröger-Block
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

4.  Matrix program to analyze primary structure homology.

Authors:  J Novotny
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

5.  Pattern recognition in nucleic acid sequences. I. A general method for finding local homologies and symmetries.

Authors:  W B Goad; M I Kanehisa
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

6.  Two-dimensional graphic analysis of DNA sequence homologies.

Authors:  R Harr; P Hagblom; P Gustafsson
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

7.  A large database DNA sequence handling program with generalized searching specifications.

Authors:  P A Stockwell
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

8.  A strategy for sequence phylogeny research.

Authors:  D Sankoff; R J Cedergren; W McKay
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

9.  Sequence data handling by computer.

Authors:  R Staden
Journal:  Nucleic Acids Res       Date:  1977-11       Impact factor: 16.971

10.  Rapid similarity searches of nucleic acid and protein data banks.

Authors:  W J Wilbur; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1983-02       Impact factor: 11.205

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  9 in total

1.  Differential regulation of genes for resveratrol synthase in cell cultures ofArachis hypogaea L.

Authors:  T Lanz; G Schröder; J Schröder
Journal:  Planta       Date:  1990-05       Impact factor: 4.116

2.  Genes downstream from pucB and pucA are essential for formation of the B800-850 complex of Rhodobacter capsulatus.

Authors:  H V Tichy; B Oberlé; H Stiehle; E Schiltz; G Drews
Journal:  J Bacteriol       Date:  1989-09       Impact factor: 3.490

Review 3.  Function and regulation of the divisome for mitochondrial fission.

Authors:  Felix Kraus; Krishnendu Roy; Thomas J Pucadyil; Michael T Ryan
Journal:  Nature       Date:  2021-02-03       Impact factor: 49.962

4.  DNA sequence analysis: a procedure to find homologies among many sequences.

Authors:  G Krishnan; R K Kaul; P Jagadeeswaran
Journal:  Nucleic Acids Res       Date:  1986-01-10       Impact factor: 16.971

5.  Cloning and sequencing of the hemA gene of Rhodobacter capsulatus and isolation of a delta-aminolevulinic acid-dependent mutant strain.

Authors:  U Hornberger; R Liebetanz; H V Tichy; G Drews
Journal:  Mol Gen Genet       Date:  1990-05

6.  IS150: distribution, nucleotide sequence and phylogenetic relationships of a new E. coli insertion element.

Authors:  E Schwartz; M Kröger; B Rak
Journal:  Nucleic Acids Res       Date:  1988-07-25       Impact factor: 16.971

7.  Molecular analysis of chalcone and dihydropinosylvin synthase from Scots pine (Pinus sylvestris), and differential regulation of these and related enzyme activities in stressed plants.

Authors:  J Fliegmann; G Schröder; S Schanz; L Britsch; J Schröder
Journal:  Plant Mol Biol       Date:  1992-02       Impact factor: 4.076

8.  Opine transport genes in the octopine (occ) and nopaline (noc) catabolic regions in Ti plasmids of Agrobacterium tumefaciens.

Authors:  H Zanker; J von Lintig; J Schröder
Journal:  J Bacteriol       Date:  1992-02       Impact factor: 3.490

9.  Structure and evolution of two related transcription units of Epstein-Barr virus carrying small tandem repeats.

Authors:  G Laux; U K Freese; G W Bornkamm
Journal:  J Virol       Date:  1985-12       Impact factor: 5.103

  9 in total

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