Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Matrix program to analyze primary structure homology.

Literature DB >> 6801625

Matrix program to analyze primary structure homology.

Abstract

A FORTRAN program to analyze homology of letter strings (nucleotide or amino acid sequences) and to display the result in the form of a dot matrix is presented. The program is generally usable, user-friendly and has a number of options (filtering, "fudging," i.e., consideration of groups of homologous residues, and screening, i.e., display of only particular groups of residues) which greatly potentiate its analytical power.

Mesh：

Substances：

Year: 1982 PMID： 6801625 PMCID： PMC326120 DOI： 10.1093/nar/10.1.127

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

6 in total

1. Letter: Recognition of structural domains in globular proteins.

Authors: M G Rossman; A Liljas
Journal: J Mol Biol Date: 1974-05-05 Impact factor: 5.469

2. Cloned human and mouse kappa immunoglobulin constant and J region genes conserve homology in functional segments.

Authors: P A Hieter; E E Max; J G Seidman; J V Maizel; P Leder
Journal: Cell Date: 1980-11 Impact factor: 41.582

3. Heavy chain variable region contribution to the NPb family of antibodies: somatic mutation evident in a gamma 2a variable region.

Authors: A L Bothwell; M Paskind; M Reth; T Imanishi-Kari; K Rajewsky; D Baltimore
Journal: Cell Date: 1981-06 Impact factor: 41.582

4. Sequence data handling by computer.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1977-11 Impact factor: 16.971

5. Three cDNA clones encoding mouse transplantation antigens: homology to immunoglobulin genes.

Authors: M Steinmetz; J G Frelinger; D Fisher; T Hunkapiller; D Pereira; S M Weissman; H Uehara; S Nathenson; L Hood
Journal: Cell Date: 1981-04 Impact factor: 41.582

6. Structure of the constant and 3' untranslated regions of the murine Balb/c gamma 2a heavy chain messenger RNA.

Authors: J L Sikorav; C Auffray; F Rougeon
Journal: Nucleic Acids Res Date: 1980-07-25 Impact factor: 16.971

6 in total

27 in total

1. Nucleotide sequence and cloning in Bacillus subtilis of the Bacillus stearothermophilus pleiotropic regulatory gene degT.

Authors: M Takagi; H Takada; T Imanaka
Journal: J Bacteriol Date: 1990-01 Impact factor: 3.490

2. Fast analysis of genomic homologies: primate immunodeficiency virus.

Authors: M L Moncany; P R Courtois
Journal: J Mol Evol Date: 1996-08 Impact factor: 2.395

3. A comprehensive package for DNA sequence analysis in FORTRAN IV for the PDP-11.

Authors: J Arnold; V K Eckenrode; K Lemke; G J Phillips; S W Schaeffer
Journal: Nucleic Acids Res Date: 1986-01-10 Impact factor: 16.971

4. Nucleotide sequence of afsB, a pleiotropic gene involved in secondary metabolism in Streptomyces coelicolor A3(2) and "Streptomyces lividans".

Authors: S Horinouchi; H Suzuki; T Beppu
Journal: J Bacteriol Date: 1986-10 Impact factor: 3.490

Matrix program to analyze primary structure homology.

1. Letter: Recognition of structural domains in globular proteins.

2. Cloned human and mouse kappa immunoglobulin constant and J region genes conserve homology in functional segments.

3. Heavy chain variable region contribution to the NPb family of antibodies: somatic mutation evident in a gamma 2a variable region.

4. Sequence data handling by computer.

5. Three cDNA clones encoding mouse transplantation antigens: homology to immunoglobulin genes.

6. Structure of the constant and 3' untranslated regions of the murine Balb/c gamma 2a heavy chain messenger RNA.

1. Nucleotide sequence and cloning in Bacillus subtilis of the Bacillus stearothermophilus pleiotropic regulatory gene degT.

2. Fast analysis of genomic homologies: primate immunodeficiency virus.

3. A comprehensive package for DNA sequence analysis in FORTRAN IV for the PDP-11.

4. Nucleotide sequence of afsB, a pleiotropic gene involved in secondary metabolism in Streptomyces coelicolor A3(2) and "Streptomyces lividans".

5. DNA sequence analysis: a procedure to find homologies among many sequences.

6. Methylation blockage and other improvements to a comprehensive DNA analysis program.

7. Sequence similarity ('homology') searching for molecular biologists.

8. Nucleotide sequence of the Bacillus stearothermophilus alpha-amylase gene.

9. The Nature of Nucleotide Sequence Divergence between Barley and Maize Chloroplast DNA.

10. Sequence of the Saccharomyces GAL region and its transcription in vivo.