Literature DB >> 6174938

Improvements to a program for DNA analysis: a procedure to find homologies among many sequences.

C Queen, M N Wegman, L J Korn.   

Abstract

We have devised an algorithm for finding partial homologies among a set of nucleotide sequences. The algorithm and other improvements have been incorporated into a commonly used computer program for the analysis of sequence data.

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Year:  1982        PMID： 6174938      PMCID： PMC326145          DOI： 10.1093/nar/10.1.449

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  35 in total

1.  Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter.

Authors:  D Pribnow
Journal:  Proc Natl Acad Sci U S A       Date:  1975-03       Impact factor: 11.205

2.  Nucleotide sequence of cloned cDNA for bovine corticotropin-beta-lipotropin precursor.

Authors:  S Nakanishi; A Inoue; T Kita; M Nakamura; A C Chang; S N Cohen; S Numa
Journal:  Nature       Date:  1979-03-29       Impact factor: 49.962

3.  Structure of simian virus 40 recombinants that contain both host and viral DNA sequences. II. The structure of variant 1103 and its comparison to variant CVPS/1P2 (EcoRI res).

Authors:  T McCutchan; M Singer; M Rosenberg
Journal:  J Biol Chem       Date:  1979-05-10       Impact factor: 5.157

4.  Complete nucleotide sequence of SV40 DNA.

Authors:  W Fiers; R Contreras; G Haegemann; R Rogiers; A Van de Voorde; H Van Heuverswyn; J Van Herreweghe; G Volckaert; M Ysebaert
Journal:  Nature       Date:  1978-05-11       Impact factor: 49.962

5.  Computer analysis of nucleic acid regulatory sequences.

Authors:  L J Korn; C L Queen; M N Wegman
Journal:  Proc Natl Acad Sci U S A       Date:  1977-10       Impact factor: 11.205

6.  Sequence of the 16 S-23 s spacer region in two ribosomal RNA operons of Escherichia coli.

Authors:  R A Young; R Macklis; J A Steitz
Journal:  J Biol Chem       Date:  1979-05-10       Impact factor: 5.157

7.  A rho-dependent termination site in the gene coding for tyrosine tRNA su3 of Escherichia coli.

Authors:  H Küpper; T Sekiya; M Rosenberg; J Egan; A Landy
Journal:  Nature       Date:  1978-03-30       Impact factor: 49.962

8.  The sequence of the chromosomal mouse beta-globin major gene: homologies in capping, splicing and poly(A) sites.

Authors:  D A Konkel; S M Tilghman; P Leder
Journal:  Cell       Date:  1978-12       Impact factor: 41.582

9.  Nucleotide sequence of Xenopus borealis oocyte 5S DNA: comparison of sequences that flank several related eucaryotic genes.

Authors:  L J Korn; D D Brown
Journal:  Cell       Date:  1978-12       Impact factor: 41.582

10.  Nucleotide sequence of an RNA polymerase binding site from the DNA of bacteriophage fd.

Authors:  H Schaller; C Gray; K Herrmann
Journal:  Proc Natl Acad Sci U S A       Date:  1975-02       Impact factor: 11.205
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  13 in total

1.  An efficient algorithm for identifying matches with errors in multiple long molecular sequences.

Authors:  M Y Leung; B E Blaisdell; C Burge; S Karlin
Journal:  J Mol Biol       Date:  1991-10-20       Impact factor: 5.469

2.  Evidence for transcription and potential translation of the human 1.9 kb HindIII repetitive element.

Authors:  B A Citron; P V Chaudary; D N Rao; S Kaufman
Journal:  Nucleic Acids Res       Date:  1986-04-11       Impact factor: 16.971

3.  DNA sequence analysis: a procedure to find homologies among many sequences.

Authors:  G Krishnan; R K Kaul; P Jagadeeswaran
Journal:  Nucleic Acids Res       Date:  1986-01-10       Impact factor: 16.971

4.  Sequence similarity ('homology') searching for molecular biologists.

Authors:  D Davison
Journal:  Bull Math Biol       Date:  1985       Impact factor: 1.758

5.  Discovering active motifs in sets of related protein sequences and using them for classification.

Authors:  J T Wang; T G Marr; D Shasha; B A Shapiro; G W Chirn
Journal:  Nucleic Acids Res       Date:  1994-07-25       Impact factor: 16.971

6.  Portable microcomputer software for nucleotide sequence analysis.

Authors:  B Fristensky; J Lis; R Wu
Journal:  Nucleic Acids Res       Date:  1982-10-25       Impact factor: 16.971

7.  A comprehensive sequence analysis program for the IBM personal computer.

Authors:  C Queen; L J Korn
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

8.  Simplified computer programs for search of homology within nucleotide sequences.

Authors:  M Kröger; A Kröger-Block
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

9.  Pattern recognition in several sequences: consensus and alignment.

Authors:  M S Waterman; R Arratia; D J Galas
Journal:  Bull Math Biol       Date:  1984       Impact factor: 1.758

10.  A convenient method for locating sets of related short sequences in DNA sequences of any length.

Authors:  A Salemme; A V Furano
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971
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