Literature DB >> 6801626

Pattern recognition in nucleic acid sequences. I. A general method for finding local homologies and symmetries.

W B Goad, M I Kanehisa.   

Abstract

We present an algorithm--a generalization of the Needleman-Wunsch-Sellers algorithm--which finds within longer sequences all subsequences that resemble one another locally. The probability that so close a resemblance would occur by chance alone is calculated and used to classify these local homologies according to statistical significance. Repeats and inverted repeats may also be found. Results for both random and biological nucleic acid sequences are presented. Fourteen complete genomes are analyzed for dyad symmetries.

Mesh：

Substances：

Year:  1982        PMID： 6801626      PMCID： PMC326131          DOI： 10.1093/nar/10.1.247

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  20 in total

1.  Pattern recognition in genetic sequences.

Authors:  P H Sellers
Journal:  Proc Natl Acad Sci U S A       Date:  1979-07       Impact factor: 11.205

2.  Complete nucleotide sequence of SV40 DNA.

Authors:  W Fiers; R Contreras; G Haegemann; R Rogiers; A Van de Voorde; H Van Heuverswyn; J Van Herreweghe; G Volckaert; M Ysebaert
Journal:  Nature       Date:  1978-05-11       Impact factor: 49.962

3.  Matching sequences under deletion-insertion constraints.

Authors:  D Sankoff
Journal:  Proc Natl Acad Sci U S A       Date:  1972-01       Impact factor: 11.205

4.  Estimation of secondary structure in ribonucleic acids.

Authors:  I Tinoco; O C Uhlenbeck; M D Levine
Journal:  Nature       Date:  1971-04-09       Impact factor: 49.962

5.  Coding potential and regulatory signals of the polyoma virus genome.

Authors:  E Soeda; J R Arrand; N Smolar; J E Walsh; B E Griffin
Journal:  Nature       Date:  1980-01-31       Impact factor: 49.962

6.  Nucleotide sequence of bacteriophage fd DNA.

Authors:  E Beck; R Sommer; E A Auerswald; C Kurz; B Zink; G Osterburg; H Schaller; K Sugimoto; H Sugisaki; T Okamoto; M Takanami
Journal:  Nucleic Acids Res       Date:  1978-12       Impact factor: 16.971

7.  Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene.

Authors:  W Fiers; R Contreras; F Duerinck; G Haegeman; D Iserentant; J Merregaert; W Min Jou; F Molemans; A Raeymaekers; A Van den Berghe; G Volckaert; M Ysebaert
Journal:  Nature       Date:  1976-04-08       Impact factor: 49.962

8.  BK virus DNA: complete nucleotide sequence of a human tumor virus.

Authors:  R C Yang; R Wu
Journal:  Science       Date:  1979-10-26       Impact factor: 47.728

9.  Nucleotide sequence of the yeast plasmid.

Authors:  J L Hartley; J E Donelson
Journal:  Nature       Date:  1980-08-28       Impact factor: 49.962

10.  Nucleotide sequence of the hepatitis B virus genome (subtype ayw) cloned in E. coli.

Authors:  F Galibert; E Mandart; F Fitoussi; P Tiollais; P Charnay
Journal:  Nature       Date:  1979-10-25       Impact factor: 49.962
View more
  115 in total

1.  Similarity between average distance maps of structurally homologous proteins.

Authors:  T Kikuchi
Journal:  J Protein Chem       Date:  1992-06

2.  Histone H3 transcription in Saccharomyces cerevisiae is controlled by multiple cell cycle activation sites and a constitutive negative regulatory element.

Authors:  K B Freeman; L R Karns; K A Lutz; M M Smith
Journal:  Mol Cell Biol       Date:  1992-12       Impact factor: 4.272

3.  Induction of a Streptomyces cacaoi beta-lactamase gene cloned in S. lividans.

Authors:  V M Lenzini; J Magdalena; C Fraipont; B Joris; A Matagne; J Dusart
Journal:  Mol Gen Genet       Date:  1992-10

4.  HSP47: a tissue-specific, transformation-sensitive, collagen-binding heat shock protein of chicken embryo fibroblasts.

Authors:  K Hirayoshi; H Kudo; H Takechi; A Nakai; A Iwamatsu; K M Yamada; K Nagata
Journal:  Mol Cell Biol       Date:  1991-08       Impact factor: 4.272

5.  Cloning of the cDNA encoding the myosin heavy chain of a vertebrate cellular myosin.

Authors:  R V Shohet; M A Conti; S Kawamoto; Y A Preston; D A Brill; R S Adelstein
Journal:  Proc Natl Acad Sci U S A       Date:  1989-10       Impact factor: 11.205

6.  The Enterococcus hirae R40 penicillin-binding protein 5 and the methicillin-resistant Staphylococcus aureus penicillin-binding protein 2' are similar.

Authors:  A el Kharroubi; P Jacques; G Piras; J Van Beeumen; J Coyette; J M Ghuysen
Journal:  Biochem J       Date:  1991-12-01       Impact factor: 3.857

7.  Identification and organization of carbon dioxide fixation genes in Xanthobacter flavus H4-14.

Authors:  W G Meijer; A C Arnberg; H G Enequist; P Terpstra; M E Lidstrom; L Dijkhuizen
Journal:  Mol Gen Genet       Date:  1991-02

8.  Uncertainty in homology inferences: assessing and improving genomic sequence alignment.

Authors:  Gerton Lunter; Andrea Rocco; Naila Mimouni; Andreas Heger; Alexandre Caldeira; Jotun Hein
Journal:  Genome Res       Date:  2007-12-11       Impact factor: 9.043

9.  Identification of BlaR, the signal transducer for beta-lactamase production in Bacillus licheniformis, as a penicillin-binding protein with strong homology to the OXA-2 beta-lactamase (class D) of Salmonella typhimurium.

Authors:  Y F Zhu; I H Curran; B Joris; J M Ghuysen; J O Lampen
Journal:  J Bacteriol       Date:  1990-02       Impact factor: 3.490

10.  The diversity of the catalytic properties of class A beta-lactamases.

Authors:  A Matagne; A M Misselyn-Bauduin; B Joris; T Erpicum; B Granier; J M Frère
Journal:  Biochem J       Date:  1990-01-01       Impact factor: 3.857
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.