Literature DB >> 6328420

Nucleotide sequence of cucumber pale fruit viroid: homology to hop stunt viroid.

T Sano, I Uyeda, E Shikata, T Ohno, Y Okada.   

Abstract

Double stranded cDNA of cucumber pale fruit viroid ( CPFV ) has been cloned by the method of Okayama and Berg (Mol.Cell.Biol.2,161-170 (1982] and the complete nucleotide sequence was established. The covalently closed circular molecules of single-stranded CPFV RNA consists of 303 nucleotides. The nucleotide sequence of CPFV was compared with the previously established sequence of hop stunt viroid (HSV), which consists of 297 nucleotides ( Ohno et al. Nucleic Acid Res.11,6185-6197 (1983]. CPFV differs from HSV in the nucleotide sequence at 16 positions which include 8 exchanges, 7 insertions and 1 deletion. Both viroids share about 95% sequence homology. Considering the pathogenic properties of both viroids together, it is concluded that CPFV is a cucumber isolate of HSV.

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Year:  1984        PMID： 6328420      PMCID： PMC318759          DOI： 10.1093/nar/12.8.3427

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  14 in total

1.  Citrus exocortis viroid: nucleotide sequence and secondary structure of an Australian isolate.

Authors:  J E Visvader; A R Gould; G E Bruening; R H Symons
Journal:  FEBS Lett       Date:  1982-01-25       Impact factor: 4.124

2.  High-efficiency cloning of full-length cDNA.

Authors:  H Okayama; P Berg
Journal:  Mol Cell Biol       Date:  1982-02       Impact factor: 4.272

3.  Structural similarities between viroids and transposable genetic elements.

Authors:  M C Kiefer; R A Owens; T O Diener
Journal:  Proc Natl Acad Sci U S A       Date:  1983-10       Impact factor: 11.205

4.  Sequencing end-labeled DNA with base-specific chemical cleavages.

Authors:  A M Maxam; W Gilbert
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

5.  Nucleotide sequence and secondary structure of citrus exocortis and chrysanthemum stunt viroid.

Authors:  H J Gross; G Krupp; H Domdey; M Raba; P Jank; C Lossow; H Alberty; K Ramm; H L Sänger
Journal:  Eur J Biochem       Date:  1982-01

6.  Chrysanthemum stunt viroid: primary sequence and secondary structure.

Authors:  J Haseloff; R H Symons
Journal:  Nucleic Acids Res       Date:  1981-06-25       Impact factor: 16.971

7.  Nucleotide sequence and secondary structure of potato spindle tuber viroid.

Authors:  H J Gross; H Domdey; C Lossow; P Jank; M Raba; H Alberty; H L Sänger
Journal:  Nature       Date:  1978-05-18       Impact factor: 49.962

8.  Avocado sunblotch viroid: primary sequence and proposed secondary structure.

Authors:  R H Symons
Journal:  Nucleic Acids Res       Date:  1981-12-11       Impact factor: 16.971

9.  Hop stunt viroid: molecular cloning and nucleotide sequence of the complete cDNA copy.

Authors:  T Ohno; N Takamatsu; T Meshi; Y Okada
Journal:  Nucleic Acids Res       Date:  1983-09-24       Impact factor: 16.971

10.  Nucleotide sequence of the rightward operator of phage lambda.

Authors:  T Maniatis; A Jeffrey; D G Kleid
Journal:  Proc Natl Acad Sci U S A       Date:  1975-03       Impact factor: 11.205
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  13 in total

1.  Relationship of viroids and certain other plant pathogenic nucleic acids to group I and II introns.

Authors:  A Hadidi
Journal:  Plant Mol Biol       Date:  1986-03       Impact factor: 4.076

2.  Compilation and analysis of viroid and viroid-like RNA sequences.

Authors:  F Bussière; D Lafontaine; J P Perreault
Journal:  Nucleic Acids Res       Date:  1996-05-15       Impact factor: 16.971

3.  Complete nucleotide sequence of a viroid isolated from Etrog citron, a new member of hop stunt viroid group.

Authors:  T Sano; T Hataya; E Shikata
Journal:  Nucleic Acids Res       Date:  1988-01-11       Impact factor: 16.971

4.  An improved procedure for the rapid one-step-cloning of full-length viroid cDNA.

Authors:  H Puchta; H L Sänger
Journal:  Arch Virol       Date:  1988       Impact factor: 2.574

5.  Nucleotide sequence of the Korean strain of hop stunt viroid (HSV).

Authors:  J Y Lee; H Puchta; K Ramm; H L Sänger
Journal:  Nucleic Acids Res       Date:  1988-09-12       Impact factor: 16.971

6.  Domains in viroids: evidence of intermolecular RNA rearrangements and their contribution to viroid evolution.

Authors:  P Keese; R H Symons
Journal:  Proc Natl Acad Sci U S A       Date:  1985-07       Impact factor: 11.205

7.  Phylogenetic analysis of hop and grapevine isolates of hop stunt viroid supports a grapevine origin for hop stunt disease.

Authors:  T Sano; R Mimura; K Ohshima
Journal:  Virus Genes       Date:  2001-01       Impact factor: 2.332

8.  Nucleotide sequence and proposed secondary structure of Columnea latent viroid: a natural mosaic of viroid sequences.

Authors:  R Hammond; D R Smith; T O Diener
Journal:  Nucleic Acids Res       Date:  1989-12-11       Impact factor: 16.971

9.  Nucleotide sequence of a hop stunt viroid (HSVd) isolate from grapefruit in Israel.

Authors:  H Puchta; K Ramm; R Hadas; M Bar-Joseph; R Luckinger; K Freimüller; H L Sänger
Journal:  Nucleic Acids Res       Date:  1989-02-11       Impact factor: 16.971

10.  Molecular and biological properties of a cloned and infectious new sequence variant of cucumber pale fruit viroid (CPFV).

Authors:  H Puchta; K Ramm; H L Sänger
Journal:  Nucleic Acids Res       Date:  1988-08-25       Impact factor: 16.971
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