Literature DB >> 2602114

Nucleotide sequence and proposed secondary structure of Columnea latent viroid: a natural mosaic of viroid sequences.

R Hammond1, D R Smith, T O Diener.   

Abstract

The Columnea latent viroid (CLV) occurs latently in certain Columnea erythrophae plants grown commercially. In potato and tomato, CLV causes potato spindle tuber viroid (PSTV)-like symptoms. Its nucleotide sequence and proposed secondary structure reveal that CLV consists of a single-stranded circular RNA of 370 nucleotides which can assume a rod-like structure with extensive base-pairing characteristic of all known viroids. The electrophoretic mobility of circular CLV under nondenaturing conditions suggests a potential tertiary structure. CLV contains extensive sequence homologies to the PSTV group of viroids but contains a central conserved region identical to that of hop stunt viroid (HSV). CLV also shares some biological properties with each of the two types of viroids. Most probably, CLV is the result of intracellular RNA recombination between an HSV-type and one or more PSTV-type viroids replicating in the same plant.

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Year:  1989        PMID: 2602114      PMCID: PMC335232          DOI: 10.1093/nar/17.23.10083

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  26 in total

1.  Fish to bacterium gene transfer.

Authors:  R Lewin
Journal:  Science       Date:  1985-03-01       Impact factor: 47.728

2.  Sensitive and rapid diagnosis of potato spindle tuber viroid disease by nucleic Acid hybridization.

Authors:  R A Owens; T O Diener
Journal:  Science       Date:  1981-08-07       Impact factor: 47.728

3.  Complete nucleotide sequence of a viroid isolated from Etrog citron, a new member of hop stunt viroid group.

Authors:  T Sano; T Hataya; E Shikata
Journal:  Nucleic Acids Res       Date:  1988-01-11       Impact factor: 16.971

4.  Nucleotide sequence of a hop stunt viroid isolate from the German grapevine cultivar 'Riesling'.

Authors:  H Puchta; K Ramm; H L Sänger
Journal:  Nucleic Acids Res       Date:  1988-03-25       Impact factor: 16.971

5.  Isolation of three viroids and a circular RNA from grapevines.

Authors:  M A Rezaian; A M Koltunow; L R Krake
Journal:  J Gen Virol       Date:  1988-02       Impact factor: 3.891

6.  Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter.

Authors:  D A Melton; P A Krieg; M R Rebagliati; T Maniatis; K Zinn; M R Green
Journal:  Nucleic Acids Res       Date:  1984-09-25       Impact factor: 16.971

7.  The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.

Authors:  J Vieira; J Messing
Journal:  Gene       Date:  1982-10       Impact factor: 3.688

8.  Nucleotide sequence of cucumber pale fruit viroid: homology to hop stunt viroid.

Authors:  T Sano; I Uyeda; E Shikata; T Ohno; Y Okada
Journal:  Nucleic Acids Res       Date:  1984-04-25       Impact factor: 16.971

9.  Hop stunt viroid: molecular cloning and nucleotide sequence of the complete cDNA copy.

Authors:  T Ohno; N Takamatsu; T Meshi; Y Okada
Journal:  Nucleic Acids Res       Date:  1983-09-24       Impact factor: 16.971

10.  Linear oligomeric potato spindle tuber viroid (PSTV) RNAs are accurately processed in vitro to the monomeric circular viroid proper when incubated with a nuclear extract from healthy potato cells.

Authors:  M Tsagris; M Tabler; H P Mühlbach; H L Sänger
Journal:  EMBO J       Date:  1987-08       Impact factor: 11.598

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  24 in total

1.  Specific HDV RNA-templated transcription by pol II in vitro.

Authors:  J Filipovska; M M Konarska
Journal:  RNA       Date:  2000-01       Impact factor: 4.942

2.  Identification of multiple structural domains regulating viroid pathogenicity.

Authors:  T Sano; T Candresse; R W Hammond; T O Diener; R A Owens
Journal:  Proc Natl Acad Sci U S A       Date:  1992-11-01       Impact factor: 11.205

Review 3.  Viroids: an Ariadne's thread into the RNA labyrinth.

Authors:  José-Antonio Daròs; Santiago F Elena; Ricardo Flores
Journal:  EMBO Rep       Date:  2006-06       Impact factor: 8.807

4.  Ribonuclease T1 generates circular RNA molecules from viroid-specific RNA transcripts by cleavage and intramolecular ligation.

Authors:  M Tsagris; M Tabler; H L Sänger
Journal:  Nucleic Acids Res       Date:  1991-04-11       Impact factor: 16.971

5.  Phylogeny of viroids, viroidlike satellite RNAs, and the viroidlike domain of hepatitis delta virus RNA.

Authors:  S F Elena; J Dopazo; R Flores; T O Diener; A Moya
Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-01       Impact factor: 11.205

Review 6.  Origin and evolution of viroids and viroid-like satellite RNAs.

Authors:  T O Diener
Journal:  Virus Genes       Date:  1995       Impact factor: 2.332

7.  Compilation and analysis of viroid and viroid-like RNA sequences.

Authors:  F Bussière; D Lafontaine; J P Perreault
Journal:  Nucleic Acids Res       Date:  1996-05-15       Impact factor: 16.971

8.  New nucleotide sequence data on the EMBL File Server.

Authors: 
Journal:  Nucleic Acids Res       Date:  1990-01-25       Impact factor: 16.971

9.  Prominent polypurine and polypyrimidine tracts in plant viroids and in RNA of the human hepatitis delta agent.

Authors:  A D Branch; S E Lee; O D Neel; H D Robertson
Journal:  Nucleic Acids Res       Date:  1993-07-25       Impact factor: 16.971

10.  A viroid from Solanum pseudocapsicum closely related to the tomato apical stunt viroid.

Authors:  R L Spieker; S Marinkovic; H L Sänger
Journal:  Arch Virol       Date:  1996       Impact factor: 2.574

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