Literature DB >> 6312412

Hop stunt viroid: molecular cloning and nucleotide sequence of the complete cDNA copy.

T Ohno, N Takamatsu, T Meshi, Y Okada.   

Abstract

The complete cDNA of hop stunt viroid (HSV) has been cloned by the method of Okayama and Berg (Mol.Cell.Biol.2,161-170. (1982] and the complete nucleotide sequence has been established. The covalently closed circular single-stranded HSV RNA consists of 297 nucleotides. The secondary structure predicted for HSV contains 67% of its residues base-paired. The native HSV can possess an extended rod-like structure characteristic of viroids previously established. The central region of the native HSV has a similar structure to the conserved region found in all viroids sequenced so far except for avocado sunblotch viroid. The sequence homologous to the 5'-end of U1a RNA is also found in the sequence of HSV but not in the central conserved region.

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Year:  1983        PMID： 6312412      PMCID： PMC326366          DOI： 10.1093/nar/11.18.6185

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  26 in total

1.  Citrus exocortis viroid: nucleotide sequence and secondary structure of an Australian isolate.

Authors:  J E Visvader; A R Gould; G E Bruening; R H Symons
Journal:  FEBS Lett       Date:  1982-01-25       Impact factor: 4.124

2.  Sensitive and rapid diagnosis of potato spindle tuber viroid disease by nucleic Acid hybridization.

Authors:  R A Owens; T O Diener
Journal:  Science       Date:  1981-08-07       Impact factor: 47.728

3.  Exocortis viroid: alteration in the proteins of Gynura aurantiaca accompanying viroid infection.

Authors:  V Conejero; J S Semancik
Journal:  Virology       Date:  1977-03       Impact factor: 3.616

4.  Nucleotide sequence of immunoglobulin heavy chain joining segments between translocated VH and mu constant regions genes.

Authors:  O Bernard; N M Gough
Journal:  Proc Natl Acad Sci U S A       Date:  1980-06       Impact factor: 11.205

5.  High-efficiency cloning of full-length cDNA.

Authors:  H Okayama; P Berg
Journal:  Mol Cell Biol       Date:  1982-02       Impact factor: 4.272

6.  RNA intermediates in potato spindle tuber viroid replication.

Authors:  R A Owens; T O Diener
Journal:  Proc Natl Acad Sci U S A       Date:  1982-01       Impact factor: 11.205

7.  Purification of biologically active globin messenger RNA by chromatography on oligothymidylic acid-cellulose.

Authors:  H Aviv; P Leder
Journal:  Proc Natl Acad Sci U S A       Date:  1972-06       Impact factor: 11.205

8.  Avocado sunblotch viroid: primary sequence and proposed secondary structure.

Authors:  R H Symons
Journal:  Nucleic Acids Res       Date:  1981-12-11       Impact factor: 16.971

9.  Molecular cloning and nucleotide sequence of the 30K and the coat protein cistron of TMV (tomato strain) genome.

Authors:  N Takamatsu; T Ohno; T Meshi; Y Okada
Journal:  Nucleic Acids Res       Date:  1983-06-11       Impact factor: 16.971

10.  Nucleotide sequence of the rightward operator of phage lambda.

Authors:  T Maniatis; A Jeffrey; D G Kleid
Journal:  Proc Natl Acad Sci U S A       Date:  1975-03       Impact factor: 11.205
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  32 in total

1.  Chemical synthesis of the 24 RNA fragments corresponding to hop stunt viroid.

Authors:  H Tanimura; M Maeda; T Fukazawa; M Sekine; T Hata
Journal:  Nucleic Acids Res       Date:  1989-10-25       Impact factor: 16.971

2.  Sequence analysis of five new field isolates demonstrates that the chain length of potato spindle tuber viroid (PSTVd) is not strictly conserved but as variable as in other viroids.

Authors:  T Herold; B Haas; R P Singh; A Boucher; H L Sänger
Journal:  Plant Mol Biol       Date:  1992-05       Impact factor: 4.076

3.  Phylogeny of viroids, viroidlike satellite RNAs, and the viroidlike domain of hepatitis delta virus RNA.

Authors:  S F Elena; J Dopazo; R Flores; T O Diener; A Moya
Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-01       Impact factor: 11.205

4.  Primary and secondary structure of citrus viroid IV (CVd IV), a new chimeric viroid present in dwarfed grapefruit in Israel.

Authors:  H Puchta; K Ramm; R Luckinger; R Hadas; M Bar-Joseph; H L Snger
Journal:  Nucleic Acids Res       Date:  1991-12-11       Impact factor: 16.971

5.  Relationship of viroids and certain other plant pathogenic nucleic acids to group I and II introns.

Authors:  A Hadidi
Journal:  Plant Mol Biol       Date:  1986-03       Impact factor: 4.076

6.  Compilation and analysis of viroid and viroid-like RNA sequences.

Authors:  F Bussière; D Lafontaine; J P Perreault
Journal:  Nucleic Acids Res       Date:  1996-05-15       Impact factor: 16.971

7.  Complete nucleotide sequence of a viroid isolated from Etrog citron, a new member of hop stunt viroid group.

Authors:  T Sano; T Hataya; E Shikata
Journal:  Nucleic Acids Res       Date:  1988-01-11       Impact factor: 16.971

8.  Nucleotide sequence of a hop stunt viroid (HSVd) isolate from grapefruit in Israel.

Authors:  H Puchta; K Ramm; R Hadas; M Bar-Joseph; R Luckinger; K Freimüller; H L Sänger
Journal:  Nucleic Acids Res       Date:  1989-02-11       Impact factor: 16.971

9.  Prominent polypurine and polypyrimidine tracts in plant viroids and in RNA of the human hepatitis delta agent.

Authors:  A D Branch; S E Lee; O D Neel; H D Robertson
Journal:  Nucleic Acids Res       Date:  1993-07-25       Impact factor: 16.971

10.  Nucleotide sequence of cucumber pale fruit viroid: homology to hop stunt viroid.

Authors:  T Sano; I Uyeda; E Shikata; T Ohno; Y Okada
Journal:  Nucleic Acids Res       Date:  1984-04-25       Impact factor: 16.971
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