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Literature DB >> 11210940

Phylogenetic analysis of hop and grapevine isolates of hop stunt viroid supports a grapevine origin for hop stunt disease.

Abstract

We have examined sequence variability among nine isolates of hop stunt viroid (HSVd) collected from hop gardens in Tohoku district in Japan, the only area in the world where hop stunt disease is endemic. Six different consensus and one-consensus sequences as well as 12 sequence variants were detected in the nine HSVd-hop isolates, which suggested the sequence of HSVd-hop was remarkably variable. A neighbor-joining analysis was carried out on the new HSVd-hop sequences together with 44 previously described variants of HSVd isolated from hop and other species. All the HSVd-hop sequences recovered from hops cultivated in the Tohoku district of Japan as well as the type isolate and two Korean isolates form a cluster with the HSVd-g subtype 1 commonly recovered from grapevine. This close relationship between HSVd-hop and -grapevine isolates strongly supports the grapevine origin for hop stunt disease.

Entities: Disease Species

Mesh：

Substances：
DNA, Complementary

Year: 2001 PMID： 11210940 DOI： 10.1023/a:1008182302704

Source DB: PubMed Journal: Virus Genes ISSN： 0920-8569 Impact factor: 2.332

16 in total

1. The viroid and viroid-like RNA database.

Authors: D A Lafontaine; P Deschênes; F Bussière; V Poisson; J P Perreault
Journal: Nucleic Acids Res Date: 1999-01-01 Impact factor: 16.971

2. Complete nucleotide sequence of a viroid isolated from Etrog citron, a new member of hop stunt viroid group.

Authors: T Sano; T Hataya; E Shikata
Journal: Nucleic Acids Res Date: 1988-01-11 Impact factor: 16.971

3. Nucleotide sequence of the Korean strain of hop stunt viroid (HSV).

Authors: J Y Lee; H Puchta; K Ramm; H L Sänger
Journal: Nucleic Acids Res Date: 1988-09-12 Impact factor: 16.971

4. The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors: N Saitou; M Nei
Journal: Mol Biol Evol Date: 1987-07 Impact factor: 16.240

5. Hop stunt viroid strains from dapple fruit disease of plum and peach in Japan.

Authors: T Sano; T Hataya; Y Terai; E Shikata
Journal: J Gen Virol Date: 1989-06 Impact factor: 3.891

6. Eleven new sequence variants of citrus exocortis viroid and the correlation of sequence with pathogenicity.

Authors: J E Visvader; R H Symons
Journal: Nucleic Acids Res Date: 1985-04-25 Impact factor: 16.971

7. Hop stunt viroid (HSVd) sequence variants from Prunus species: evidence for recombination between HSVd isolates.

Authors: S A Kofalvi; J F Marcos; M C Cañizares; V Pallás; T Candresse
Journal: J Gen Virol Date: 1997-12 Impact factor: 3.891

8. Nucleotide sequence of cucumber pale fruit viroid: homology to hop stunt viroid.

Authors: T Sano; I Uyeda; E Shikata; T Ohno; Y Okada
Journal: Nucleic Acids Res Date: 1984-04-25 Impact factor: 16.971

9. Correlation of hop stunt viroid variants to cachexia and xyloporosis diseases of citrus.

Authors: K Reanwarakorn; J S Semancik
Journal: Phytopathology Date: 1999-07 Impact factor: 4.025

10. Nucleotide sequence of a hop stunt viroid (HSVd) isolate from the German grapevine rootstock 5BB as determined by PCR-mediated sequence analysis.

Authors: H Puchta; K Ramm; R Luckinger; K Freimüller; H L Sänger
Journal: Nucleic Acids Res Date: 1989-07-25 Impact factor: 16.971

15 in total

1. Characterization of a distinct variant of hop stunt viroid and a new apscaviroid detected in grapevines.

Authors: Yuya Chiaki; Takao Ito
Journal: Virus Genes Date: 2020-01-08 Impact factor: 2.332

2. Experimental transmission of pospiviroid populations to weed species characteristic of potato and hop fields.

Authors: J Matousek; L Orctová; J Ptácek; J Patzak; P Dedic; G Steger; D Riesner
Journal: J Virol Date: 2007-08-22 Impact factor: 5.103

3. Genetic diversity and phylogenetic analysis of Australian grapevine viroid (AGVd) isolated from different grapevines in China.

Authors: Dongmei Jiang; Shan Peng; Zujian Wu; Zhuomin Cheng; Shifang Li
Journal: Virus Genes Date: 2008-11-30 Impact factor: 2.332

4. Pistachio (Pistacia vera L.) is a new natural host of Hop stunt viroid.

Authors: Amine Elleuch; Imen Hamdi; Olfa Ellouze; Mohamed Ghrab; Hatem Fkahfakh; Noureddine Drira
Journal: Virus Genes Date: 2013-06-18 Impact factor: 2.332

5. Global Transcriptomic Changes Induced by Infection of Cucumber (Cucumis sativus L.) with Mild and Severe Variants of Hop Stunt Viroid.

Authors: Changjian Xia; Shifang Li; Wanying Hou; Zaifeng Fan; Hong Xiao; Meiguang Lu; Teruo Sano; Zhixiang Zhang
Journal: Front Microbiol Date: 2017-12-12 Impact factor: 5.640

6. Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction.

Authors: Beatriz Navarro; Vitantonio Pantaleo; Andreas Gisel; Simon Moxon; Tamas Dalmay; György Bisztray; Francesco Di Serio; József Burgyán
Journal: PLoS One Date: 2009-11-05 Impact factor: 3.240

7. Cultivated grapevines represent a symptomless reservoir for the transmission of hop stunt viroid to hop crops: 15 years of evolutionary analysis.

Authors: Yoko Kawaguchi-Ito; Shi-Fang Li; Masaya Tagawa; Hiroyuki Araki; Masafumi Goshono; Shingen Yamamoto; Mayumi Tanaka; Masako Narita; Kazuaki Tanaka; Sheng-Xue Liu; Eishiro Shikata; Teruo Sano
Journal: PLoS One Date: 2009-12-24 Impact factor: 3.240