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Literature DB >> 7279660

Chrysanthemum stunt viroid: primary sequence and secondary structure.

Abstract

The sequence of the 356 nucleotide residues of chrysanthemum stunt viroid (CSV) has been determined. Overlapping linear viroid fragments were obtained by partial ribonuclease digestion, radiolabelled in vitro at their 5'-ends, and sequenced using partial enzymic cleavage methods. Of the CSV sequence, 69% is contained in the published sequence of potato spindle tuber viroid (PSTV). Differences in the primary sequence of CSV and PSTV suggest that neither the positive nor putative negative strands of these two viroids code for functional polypeptide products. However, the two viroids can form similar secondary structures, implicating a role for viroid structure in replication.

Entities: Species

Mesh：

Substances：
RNA, Viral
Ribonucleases

Year: 1981 PMID： 7279660 PMCID： PMC326889 DOI： 10.1093/nar/9.12.2741

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

17 in total

1. Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures.

Authors: H L Sanger; G Klotz; D Riesner; H J Gross; A K Kleinschmidt
Journal: Proc Natl Acad Sci U S A Date: 1976-11 Impact factor: 11.205

2. Comparative oligonucleotide fingerprints of three plant viroids.

Authors: H J Gross; H Domdey; H L Sänger
Journal: Nucleic Acids Res Date: 1977-06 Impact factor: 16.971

3. Potato spindle tuber viroid. XII. An investigation of viroid RNA as a messenger for protein synthesis.

Authors: J W Davies; P Kaesberg; T O Diener
Journal: Virology Date: 1974-09 Impact factor: 3.616

4. Improved estimation of secondary structure in ribonucleic acids.

Authors: I Tinoco; P N Borer; B Dengler; M D Levin; O C Uhlenbeck; D M Crothers; J Bralla
Journal: Nat New Biol Date: 1973-11-14

5. Estimation of secondary structure in ribonucleic acids.

Authors: I Tinoco; O C Uhlenbeck; M D Levine
Journal: Nature Date: 1971-04-09 Impact factor: 49.962

6. Citrus exocortis viroid: survey of protein synthesis in Xenopus laevis oocytes following addition of viroid RNA.

Authors: J S Semancik; V Conejero; J Gerhart
Journal: Virology Date: 1977-07-01 Impact factor: 3.616

7. Exocortis viroid: alteration in the proteins of Gynura aurantiaca accompanying viroid infection.

Authors: V Conejero; J S Semancik
Journal: Virology Date: 1977-03 Impact factor: 3.616

8. The use of thin acrylamide gels for DNA sequencing.

Authors: F Sanger; A R Coulson
Journal: FEBS Lett Date: 1978-03-01 Impact factor: 4.124

9. Nucleotide sequence and secondary structure of potato spindle tuber viroid.

Authors: H J Gross; H Domdey; C Lossow; P Jank; M Raba; H Alberty; H L Sänger
Journal: Nature Date: 1978-05-18 Impact factor: 49.962

10. Mapping adenines, guanines, and pyrimidines in RNA.

Authors: H Donis-Keller; A M Maxam; W Gilbert
Journal: Nucleic Acids Res Date: 1977-08 Impact factor: 16.971

45 in total

1. The strands of both polarities of a small circular RNA from carnation self-cleave in vitro through alternative double- and single-hammerhead structures.

Authors: C Hernández; J A Daròs; S F Elena; A Moya; R Flores
Journal: Nucleic Acids Res Date: 1992-12-11 Impact factor: 16.971

Chrysanthemum stunt viroid: primary sequence and secondary structure.

1. Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures.

2. Comparative oligonucleotide fingerprints of three plant viroids.

3. Potato spindle tuber viroid. XII. An investigation of viroid RNA as a messenger for protein synthesis.

4. Improved estimation of secondary structure in ribonucleic acids.

5. Estimation of secondary structure in ribonucleic acids.

6. Citrus exocortis viroid: survey of protein synthesis in Xenopus laevis oocytes following addition of viroid RNA.

7. Exocortis viroid: alteration in the proteins of Gynura aurantiaca accompanying viroid infection.

8. The use of thin acrylamide gels for DNA sequencing.

9. Nucleotide sequence and secondary structure of potato spindle tuber viroid.

10. Mapping adenines, guanines, and pyrimidines in RNA.

1. The strands of both polarities of a small circular RNA from carnation self-cleave in vitro through alternative double- and single-hammerhead structures.

2. A catalytic 13-mer ribozyme.

3. Phylogeny of viroids, viroidlike satellite RNAs, and the viroidlike domain of hepatitis delta virus RNA.

4. Relationship of viroids and certain other plant pathogenic nucleic acids to group I and II introns.

5. Compilation and analysis of viroid and viroid-like RNA sequences.

6. Nucleotide sequence of a new satellite RNA of cucumber mosaic virus.

7. Intermolecular Interactions of Chrysanthemum virus B Coat Protein: Implications for Capsid Assembly.

8. Autolytic processing of a phosphorothioate diester bond.

9. Prominent polypurine and polypyrimidine tracts in plant viroids and in RNA of the human hepatitis delta agent.

10. Nucleotide sequence of cucumber pale fruit viroid: homology to hop stunt viroid.