| Literature DB >> 35854186 |
Anna Landsmann1, Carlotta Ruppert2, Jann Wieler3, Patryk Hejduk3, Alexander Ciritsis3, Karol Borkowski3, Moritz C Wurnig4, Cristina Rossi3, Andreas Boss3.
Abstract
BACKGROUND: We investigated whether features derived from texture analysis (TA) can distinguish breast density (BD) in spiral photon-counting breast computed tomography (PC-BCT).Entities:
Keywords: Breast density; Breast neoplasms; Image processing (computer-assisted); Radiomics; Tomography (x-ray computed)
Mesh:
Year: 2022 PMID: 35854186 PMCID: PMC9296720 DOI: 10.1186/s41747-022-00285-x
Source DB: PubMed Journal: Eur Radiol Exp ISSN: 2509-9280
Fig. 1Flowchart depicting patient selection workflow
Fig. 2Example definitions of regions of interest for each breast density level (a, b, c, or d) and corresponding histogram graphs summarised for all 50 automatically evaluated images. Histograms depict the number of pixels found at each pixel value; whereas the left side on the x-axis represents lower signal values, the right side on the x-axis represents higher signal values. In the histograms, two peaks can be distinguished corresponding to fatty and glandular tissue, respectively. The ratio between the two peaks depends on the breast density, with class a mostly showing the peak corresponding to fatty tissue, whereas the histogram graph for class d demonstrating mostly the peak corresponding to glandular tissue
Overview of texture features analysed for each image
| First-order features | Second-order features | |
|---|---|---|
| Histogram-based | Grey-level co-occurence matrix (GLCM) | Grey-level run-length matrix (GLRM) |
| Variance | Contrast | Short-run emphasis (SRE) |
| Skewness | Correlation | Long-run emphasis (LRE) |
| Kurtosis | Energy | Grey-level nonuniformity (GLN) |
| Entropy | Homogeneity | Run-length nonuniformity (RLN) |
| Run percentage (RP) | ||
| Low grey-level run emphasis (LGRE) | ||
| High grey-level run emphasis (HGRE) | ||
| Short-run low-grey-level emphasis (SRLGE) | ||
| Short-run high-grey-level emphasis (SRHGE) | ||
| Long-run low-grey-level emphasis (LRLGE) | ||
| Long-run high-grey-level emphasis (LRHGE) | ||
Fig. 3Mean values for each texture feature are dependent on different breast density levels (a, b, c, and d). GLN grey-level nonuniformity, HGRE High grey-level run emphasis, LGRE Low grey-level run emphasis, LRE Long-run emphasis, LRHGE Long-run high-grey-level emphasis, LRLGE Long-run low-grey-level emphasis, RLN Run-length nonuniformity, RP Run-percentage, SRE Short-run emphasis, SRHGE Short-run high-grey-level emphasis, SRLGE Short-run low-grey-level emphasis
Texture feature descriptives and p values for post hoc Bonferroni correction for each feature
| Feature | Mean | Standard deviation | 95% confidence interval | ||
|---|---|---|---|---|---|
| Lower | Upper | Bonferroni correction | |||
| 187.03 | 74.15 | 185.57 | 188.48 | < 0.001 | |
| 0.22 | 1.0 | 0.20 | 0.24 | < 0.001 | |
| 0.34 | 1.76 | 0.31 | 0.38 | < 0.001 | |
| 14.76 | 10.93 | 14.55 | 14.97 | < 0.001 | |
| 0.93 | 0.05 | 0.93 | 0.93 | < 0.001 | |
| 0.01 | 0.01 | 0.06 | 0.06 | 0.002 | |
| 0.42 | 0.08 | 0.41 | 0.42 | < 0.001 | |
| 16,193 | 0.30 | 5.44 | 5.45 | 0.01 | |
| 0.89 | 0.05 | 0.89 | 0.89 | 1.0 * | |
| 1.77 | 1.66 | 1.74 | 1.81 | 0.1 ** | |
| 468.09 | 176.12 | 464.64 | 471.54 | < 0.001 | |
| 9,432.94 | 4,143.13 | 9,351.72 | 9,514.16 | < 0.001 | |
| 0.85 | 0.62 | 0.85 | 0.85 | 0.9 * | |
| 0 | 0 | 0 | 0.4 ** | ||
| 1,156.60 | 34.88 | 1,155.92 | 1,157.29 | 1.0 | |
| 0 | 0 | 0 | 0.006 | ||
| 1,026.89 | 52.03 | 1,025.87 | 1,027.90 | 1.0 * | |
| 0.03 | 0.12 | 0.02 | 0.03 | 0.6 | |
| 2,087.82 | 1,428.11 | 2,059.82 | 2,115.81 | 0.4 | |
GLN Grey-level nonuniformity, HGRE High grey-level run emphasis, LGRE Low grey-level run emphasis, LRE Long-run emphasis, LRHGE Long-run high-grey-level emphasis, LRLGE Long-run low-grey-level emphasis, RLN Run-length nonuniformity, RP Run-percentage, SRE Short-run emphasis, SRHGE Short-run high-grey-level emphasis, SRLGE Short-run low-grey-level emphasis
*Only valid for level c compared to level d, all other p values being < 0.001
**Only valid for level a compared to level b, all other p values being < 0.001
Spearman’s correlation coefficient and p values for each texture feature and breast density level
| Texture feature | Spearman correlation coefficient (rho) | |
|---|---|---|
| Variance | 0.43 | < 0.001 |
| Skewness | -0.81 | < 0.001 |
| Kurtosis | -0.35 | < 0.001 |
| Entropy | -0.49 | < 0.001 |
| Contrast | 0.48 | < 0.001 |
| Correlation | 0.49 | < 0.001 |
| Energy | 0.47 | < 0.001 |
| Homogeneity | -0.31 | 0.003 |
| GLN | -0.59 | < 0.001 |
| RLN | -0.66 | < 0.001 |
| SRLGE | 0.41 | 0.363 |
GLN Grey-level nonuniformity, RLN Run-length nonuniformity, SRLGE Short-run low-grey-level emphasis
Fig. 4Correlation matrix for the remaining 11 texture features, sorted by hierarchical order. GLN Grey-level nonuniformity, RLN Run-length nonuniformity, SRLGE Short-run low-grey-level emphasis
Fig. 5Boxplots of mean values of the two independent texture features derived from texture analysis: skewness and grey-level nonuniformity (GLN)
Confusion matrices for multinomial logistic regression on the test dataset
| Breast density level | ||||
|---|---|---|---|---|
| 651 | 98 | 0 | 1 | |
| 127 | 517 | 104 | 1 | |
| 0 | 103 | 567 | 80 | |
| 0 | 4 | 112 | 634 | |
Breast density assessment () for 60 representative breast-CT images, performed by two readers (1: J.W.; 2: A.B.), compared to classification given the radiology resident (A.L.)
| Radiology resident | Reader 1 | Reader 2 | ||||||
|---|---|---|---|---|---|---|---|---|
| BD | BD | BD | BD | BD | BD | BD | BD | |
| BD | 15 | 0 | 0 | 0 | 15 | 0 | 0 | 0 |
| 100% | 0% | 0% | 0% | 100% | 0% | 0% | 0% | |
| BD | 0 | 16 | 1 | 0 | 1 | 16 | 0 | 0 |
| 0% | 94% | 6% | 0% | 6% | 94% | 0% | 0% | |
| BD | 0 | 2 | 13 | 0 | 0 | 4 | 9 | 2 |
| 0% | 13% | 87% | 0% | 0% | 27% | 60% | 13% | |
| BD | 0 | 0 | 3 | 10 | 0 | 0 | 0 | 13 |
| 0% | 0% | 23% | 77% | 0% | 0% | 0% | 100% | |
BD breast density
almost entirely fatty tissue
scattered glandular tissue
heterogenous dense glandular tissue
homogenous dense glandular tissue
Mean values and coefficients of variance for 19 texture features for the subset of 60 images
| Texture feature | Reader 1 (mean) | Reader 2 (mean) | Reader 3 (mean) | Coefficient of variance |
|---|---|---|---|---|
| Variance | 189 | 186 | 186 | 3.23 |
| Skewness | 0.653 | 0.491 | 0.578 | -6.93 |
| Kurtosis | 0.412 | 0.295 | 0.521 | -2.66 |
| Entropy | 11.3 | 11.5 | 11.6 | 4.13 |
| Contrast | 0.944 | 0.944 | 0.942 | 0.21 |
| Correlation | 0.006 | 0.006 | 0.006 | 4.85 |
| Energy | 0.443 | 0.437 | 0.438 | 1.11 |
| Homogeneity | 5.37 | 5.41 | 5.39 | 0.57 |
| SRE | 0.874 | 0.878 | 0.877 | 0.4 |
| LRE | 1.82 | 1.77 | 1.79 | 1.91 |
| GLN | 1,860 | 1,550 | 1,800 | 10.85 |
| RLN | 33,000 | 28,800 | 32,200 | 8.29 |
| RP | 0.829 | 0.835 | 0.833 | 0.57 |
| LGRE | 0.001 | 0.001 | 0.002 | 5.71 |
| HGRE | 1,140 | 1,150 | 1,140 | 0.49 |
| SRLGE | 0.001 | 0.001 | 0.001 | 5.6 |
| SRHGE | 1,000 | 1,010 | 1,000 | 0.63 |
| LRLGE | 0.002 | 0.003 | 0.005 | 6.68 |
| LRHGE | 2,300 | 2,210 | 2,260 | 2.76 |
GLN Grey-level nonuniformity, HGRE High grey-level run emphasis, LGRE Low grey-level run emphasis, LRE Long-run emphasis, LRHGE Long-run high-grey-level emphasis, LRLGE Long-run low-grey-level emphasis, RLN Run-length nonuniformity, RP Run-percentage, SRE Short-run emphasis, SRHGE Short-run high-grey-level emphasis, SRLGE Short-run low-grey-level emphasis