| Literature DB >> 35519116 |
Sona M Melikova1, Alexander P Voronin2, Jaroslaw Panek3, Nikita E Frolov4, Anastasia V Shishkina5, Alexey A Rykounov6, Peter Yu Tretyakov7, Mikhail V Vener4.
Abstract
This paper bridges the gap between high-level ab initio computations of gas-phase models of 1 : 1 arene-arene complexes and calculations of the two-component (binary) organic crystals using atom-atom potentials. The studied crystals consist of electron-rich and electron-deficient compounds, which form infinite stacks (columns) of heterodimers. The sublimation enthalpy of crystals has been evaluated by DFT periodic calculations, while intermolecular interactions have been characterized by Bader analysis of the periodic electronic density. The consideration of aromatic compounds without a dipole moment makes it possible to reveal the contribution of quadrupole-quadrupole interactions to the π-stacking energy. These interactions are significant for heterodimers formed by arenes with more than 2 rings, with absolute values of the traceless quadrupole moment (Q zz) larger than 10 D Å. The further aggregation of neighboring stacks is due to the C-H⋯F interactions in arene/perfluoroarene crystals. In crystals consisting of arene and an electron-deficient compound such as pyromellitic dianhydride, aggregation occurs due to the C-H⋯O interactions. The C-H⋯F and C-H⋯O inter-stacking interactions make the main contribution to the sublimation enthalpy, which exceeds 150 kJ mol-1 for the two-component crystals formed by arenes with more than 2 rings. This journal is © The Royal Society of Chemistry.Entities:
Year: 2020 PMID: 35519116 PMCID: PMC9055576 DOI: 10.1039/d0ra04799f
Source DB: PubMed Journal: RSC Adv ISSN: 2046-2069 Impact factor: 4.036
Scheme 1The electron-rich molecules under study. Molecule designations (the Cambridge Structural Database Refcodes) are given in parentheses.
Scheme 2The electron-deficient molecules under study. Molecule designations (the Cambridge Structural Database Refcodes) are given in parentheses.
Fig. 1The system of coordinates used for the description of the orientation of molecules forming a heterodimer. z1 and z2 denote the axis of symmetry of two molecules (D6h is the case of benzene and C6F6; D2h for the remaining molecules). R is the distance between their centers of mass.
The quadrupole–quadrupole interaction energy Uavs. the sum of Coulomb (ECoul) and polarization (Epol) energy b of stacked heterodimers extracted from the experimental crystal structures of arene–perfluoroarene crystals. R denotes for the distance between the centers of mass of the molecules forming the heterodimer
| Heterodimer |
|
|
|
|---|---|---|---|
| C6F6/benzene | −3.2 | −17 | 3.763 (3.763) |
| C6F6/naphthalene | −31.1 | −24 | 3.435 (3.430) |
| C6F6/anthracene | −34.5 | −27 | 3.619 (3.6185) |
| C6F6/pyrene | −38.1 | −26 | 3.473 (3.473) |
| C10F8/naphthalene | −14.7 | −25 | 3.729 (3.7285) |
| C10F8/anthracene | −79.2 | −33 | 3.405 (3.405) |
| C10F8/pyrene | −92.5 | −43 | 3.362 (3.3625) |
Evaluated using eqn (6); Q1 and Q2 were calculated at the PBE-D3/6-31(F+)** level.
Table 1 in ref. 30.
Abbreviations used to refer electron-deficient molecules are defined in Scheme 2.
R values for heterodimers extracted from the optimized structures of the considered crystals obtained from periodic DFT are given in parentheses.
The comparison of theoretical values of the sublimation's enthalpy ΔHsuba of the considered crystalsb with the available literature data. The units are kJ mol−1
| Crystal (ref.) | Δ | |
|---|---|---|
|
|
| |
| C6F6/benzene[ | 91 | 90 |
| C6F6/naphthalene[ | 121 | 118 |
| C6F6/anthracene[ | 138 | 143 |
| C6F6/pyrene[ | 151 | 145 |
| C10F8/naphthalene[ | 147 | 146 |
| C10F8/anthracene[ | 165 | 171 |
| C10F8/pyrene[ | 173 | 173 |
| C10F8/diphenylacetylene[ | 162 | 165 |
| C14F10/diphenylacetylene[ | 174 | 184 |
| PYDMAN/naphthalene[ | 189 | — |
The Elatt values used in the ΔHsub evaluation were calculated using eqn (1).
The abbreviations used to refer electron-deficient molecules are defined in Scheme 2.
There are no experimental determinations of ΔHsub available for the considered two-component crystals.[81] Following,[29] ΔHsub is the sum of the sublimation enthalpies of the corresponding hydrocarbons.[82,83]
Fig. 2The pattern of IMIs in the heterodimers, extracted from the corresponding crystals. Topology of electron density [bond critical points (3, −1) are depicted as red dots, ring critical points (3, +1) as yellow, and cage critical points (3, +3) as green].
The Elatt values of the two-component crystals evaluated using eqn (4) and relative contributions of the π-stacking and inter-stacking interactions to it and the types of IMIs
| Crystal |
| Contribution, % | |
|---|---|---|---|
| π-stacking | Inter-stacking | ||
| C6F6/benzene | −98 (−86) | 24 (C⋯C, C⋯F) | 76 (C–H⋯F, F⋯F) |
| C6F6/naphthalene | −110 (−116) | 28 (C⋯C, C⋯F) | 72 (C–H⋯F, F⋯F, H⋯H) |
| C6F6/anthracene | −101 (−133) | 13 (C⋯C) | 87 (C–H⋯F, F⋯F, H⋯H) |
| C6F6/pyrene | −129 (−146) | 31 (C⋯C, C⋯F) | 69 (C–H⋯F, H⋯H) |
| C10F8/naphthalene | −142 (−142) | 24 (C⋯C, C⋯F) | 76 (C–H⋯F) |
| C10F8/anthracene | −177 (−160) | 37 (C⋯C) | 63 (C–H⋯F, F⋯F, H⋯H) |
| C10F8/pyrene | −155 (−168) | 34 (C⋯C) | 66 (C–H⋯F, F⋯F, H⋯H) |
| C10F8/diphenylacetylene | −149 (−157) | 30 (C⋯C, C⋯F) | 70 (C–H⋯F, F⋯F, H⋯H) |
| C14F10/diphenylacetylene | −169 (−174) | 28 (C⋯C, C⋯F) | 72 (C–H⋯F, F⋯F, H⋯H) |
| PYDMAN/naphthalene | −147 (−152) | 26 (C⋯C) | 74 (C–H⋯O, O⋯O) |
E latt values evaluated using eqn (1) are given in parenthesis.
The types of IMIs are given in parenthesis.
The accuracy of the Elatt values, evaluated using eqn (1) and (4), does not exceed ±15 kJ mol−1.[92,93] In a C6F6/anthracene crystal, these values differ by ∼ 30 kJ mol−1. It is caused by a number of bond critical points with ρb value below the threshold due to longer C–H⋯F and F⋯F distances.
SAPT2 + 3δMP2a decomposition of the dimerization energy Edim (kJ mol−1) for the C6F6/benzene, C10F8/naphthalene, C10F8/anthracene and (C10F8)2 dimer
| (Hetero)dimer |
|
|
|
|
|
|
|
|---|---|---|---|---|---|---|---|
| C6F6/benzene | 3.600 | −20.9 | 32.0 | −3.6 | −31.9 | −24.3 | −10.7 |
| C10F8/naphthalene | 3.682 | −28.5 | 50.2 | −2.9 | −69.3 | −50.5 | −21.6 |
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| C10F8/anthracene | 3.473 | −35.9 | 64.3 | −4.3 | −91.8 | −67.7 | −71.8 |
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| (C10F8)2 | 3.740 | −8.30 | 40.9 | −1.1 | −72.9 | −41.4 | 16.2 |
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Dimer structures were optimized at the PBE-D3/def2-TZVPP and MP2/def2-TZVPP levels. The MP2 data are given in bold.
The distance between the centers of mass of the molecules in the dimer.
The quadrupole–quadrupole interaction energy evaluated using eqn (5); Q1 and Q2 were calculated at the PBE-D3/6-31(F+)** level.
The geometry of the PD structure and SCS-SAPT0/aVDZ decomposition of the dimerization energy was borrowed from ref. 27.
Fig. 3The mutual orientation of the molecules in the C10F8/naphthalene and (C10F8)2 dimers extracted from the crystal (element color) and after structure relaxation in gas phase (turquoise).