Literature DB >> 26610219

Comprehensive Energy Analysis for Various Types of π-Interaction.

N Jiten Singh1, Seung Kyu Min1, Dong Young Kim1, Kwang S Kim1.   

Abstract

We have investigated various types of π-interactions, where one of the interacting π-systems is represented by an aromatic benzene molecule. The system includes Rg-π, CH-π, π-π(D), π-π(T), H-π(T), π(+)-π(D), π(+)-π(T), H(+)-π(T), π(+2)-π(D), M(+)-π, and M(+2)-π complexes, where Rg denotes a rare gas or noble atom, M denotes a metal, and D/T indicates displaced-stacked/T-shaped structure. The microsolvation effect is also considered. We note that the interaction between a cationic π system and a neutral π system (πcation-π interaction) is so far ambiguously considered as either π-π or cation-π interaction. In terms of total binding energy, the πcation-π interaction is weaker than the cation-π interaction, but much stronger than the π-π interaction. When the hydrophilic (N-H)(+) or (C-H)(+) group in a singly charged π(+) system (as in protonated histidine, arginine, pyridine, or dimethyl imidazolium) interacts with a π-system, the complex favors a T-shaped form [π(+)-π(T) complex]. However, in the presence of polar solvating molecules or counteranions, these species interact with the (N-H)(+)/(C-H)(+) group, while the π(+) system interacts with the neutral aromatic ring. Then, the displaced-stacked form [π(+)-π(D) complex] is favored or otherwise nearly isoenergetic to the π(+)-π(T) form. The π(+)-π systems are stabilized mainly by both dispersion and electrostatic energies. Ternary diagrams using either attractive energy components or both attractive and repulsive energy components show that the π(+)-π(D) complexes have more contribution from dispersion energy but less contribution from induction energy than the π(+)-π(T) complexes, while both complexes have similar percentage contributions from electrostatic and exchange energy components. In particular, the π(+)-π(D) complexes are found to be distinctly different from the π-π complexes and the non-π organic or metallic cation-π complexes.

Entities:  

Year:  2009        PMID: 26610219     DOI: 10.1021/ct800471b

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  24 in total

1.  A UB3LYP and UMP2 theoretical investigation on unusual cation-pi interaction between the triplet state HB=BH (3 Sigma g-) and H+, Li +, Na +, Be 2+ or Mg 2+.

Authors:  Fu-de Ren; Jun Ren; Sheng-nan Liu; Yuan Yue; Wen-liang Wang; Shu-sen Chen
Journal:  J Mol Model       Date:  2009-09-02       Impact factor: 1.810

2.  Isotope effect, mechanism, and origin of catalysis in the decarboxylation of mandelylthiamin.

Authors:  Ollie M Gonzalez-James; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2010-05-26       Impact factor: 15.419

3.  Roles of electrostatic interaction and dispersion in CH···CH, CH···π, and π···π ethylene dimers.

Authors:  Ye Cao; Ming Wah Wong
Journal:  J Mol Model       Date:  2014-03-28       Impact factor: 1.810

4.  Contribution of cation-π interactions to the stability of Sm/LSm oligomeric assemblies.

Authors:  Ivana D Mucić; Milan R Nikolić; Srđan Đ Stojanović
Journal:  Protoplasma       Date:  2014-11-19       Impact factor: 3.356

5.  Structure of the S. aureus PI-specific phospholipase C reveals modulation of active site access by a titratable π-cation latched loop.

Authors:  Rebecca Goldstein; Jiongjia Cheng; Boguslaw Stec; Mary F Roberts
Journal:  Biochemistry       Date:  2012-03-16       Impact factor: 3.162

6.  A density functional theory study on the interactions between dibenzothiophene and tetrafluoroborate-based ionic liquids.

Authors:  Jin Lin; Renqing Lü; Chongchong Wu; Ye Xiao; Fei Liang; Temilola Famakinwa
Journal:  J Mol Model       Date:  2017-03-31       Impact factor: 1.810

7.  Molecular dynamics analysis of the conformations of a beta-hairpin miniprotein.

Authors:  Marcus P D Hatfield; Richard F Murphy; Sándor Lovas
Journal:  J Phys Chem B       Date:  2010-03-04       Impact factor: 2.991

8.  Substituent Effects in π-Stacking of Histidine on Functionalized-SWNT and Graphene.

Authors:  Ge Tian; Huifang Li; Wanyong Ma; Yixuan Wang
Journal:  Comput Theor Chem       Date:  2015-06-15       Impact factor: 1.926

9.  Effect of stepwise microhydration on the methylammonium···phenol and ammonium···phenol interaction.

Authors:  Ana A Rodríguez-Sanz; J Carrazana-García; Enrique M Cabaleiro-Lago; Jesús Rodríguez-Otero
Journal:  J Mol Model       Date:  2012-09-08       Impact factor: 1.810

10.  DNA-protein π-interactions in nature: abundance, structure, composition and strength of contacts between aromatic amino acids and DNA nucleobases or deoxyribose sugar.

Authors:  Katie A Wilson; Jennifer L Kellie; Stacey D Wetmore
Journal:  Nucleic Acids Res       Date:  2014-04-17       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.