Literature DB >> 28467707

Plane-Wave Density Functional Theory Meets Molecular Crystals: Thermal Ellipsoids and Intermolecular Interactions.

Volker L Deringer1, Janine George1, Richard Dronskowski1, Ulli Englert1.   

Abstract

Molecular compounds, organic and inorganic, crystallize in diverse and complex structures. They continue to inspire synthetic efforts and "crystal engineering", with implications ranging from fundamental questions to pharmaceutical research. The structural complexity of molecular solids is linked with diverse intermolecular interactions: hydrogen bonding with all its facets, halogen bonding, and other secondary bonding mechanisms of recent interest (and debate). Today, high-resolution diffraction experiments allow unprecedented insight into the structures of molecular crystals. Despite their usefulness, however, these experiments also face problems: hydrogen atoms are challenging to locate, and thermal effects may complicate matters. Moreover, even if the structure of a crystal is precisely known, this does not yet reveal the nature and strength of the intermolecular forces that hold it together. In this Account, we show that periodic plane-wave-based density functional theory (DFT) can be a useful, and sometimes unexpected, complement to molecular crystallography. Initially developed in the solid-state physics communities to treat inorganic solids, periodic DFT can be applied to molecular crystals just as well: theoretical structural optimizations "help out" by accurately localizing the elusive hydrogen atoms, reaching neutron-diffraction quality with much less expensive measurement equipment. In addition, phonon computations, again developed by physicists, can quantify the thermal motion of atoms and thus predict anisotropic displacement parameters and ORTEP ellipsoids "from scratch". But the synergy between experiment and theory goes much further than that. Once a structure has been accurately determined, computations give new and detailed insights into the aforementioned intermolecular interactions. For example, it has been debated whether short hydrogen bonds in solids have covalent character, and we have added a new twist to this discussion using an orbital-based theory that once more had been developed for inorganic solids. However, there is more to a crystal structure than a handful of short contacts between neighboring residues. We hence have used dimensionally resolved analyses to dissect crystalline networks in a systematic fashion, one spatial direction at a time. Initially applied to hydrogen bonding, these techniques can be seamlessly extended to halogen, chalcogen, and pnictogen bonding, quantifying bond strength and cooperativity in truly infinite networks. Finally, these methods promise to be useful for (bio)polymers, as we have recently exemplified for α-chitin. At the interface of increasingly accurate and popular DFT methods, ever-improving crystallographic expertise, and new challenging, chemical questions, we believe that combined experimental and theoretical studies of molecular crystals are just beginning to pick up speed.

Entities:  

Year:  2017        PMID: 28467707     DOI: 10.1021/acs.accounts.7b00067

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  9 in total

1.  Mechanisms of Crystal Plasticization by Lattice Water.

Authors:  Chenguang Wang; Changquan Calvin Sun
Journal:  Pharm Res       Date:  2022-03-17       Impact factor: 4.200

2.  Fast Quantum Approach for Evaluating the Energy of Non-Covalent Interactions in Molecular Crystals: The Case Study of Intermolecular H-Bonds in Crystalline Peroxosolvates.

Authors:  Alexander G Medvedev; Andrei V Churakov; Mger A Navasardyan; Petr V Prikhodchenko; Ovadia Lev; Mikhail V Vener
Journal:  Molecules       Date:  2022-06-24       Impact factor: 4.927

3.  The many flavours of halogen bonds - message from experimental electron density and Raman spectroscopy.

Authors:  Ruimin Wang; Janine George; Shannon Kimberly Potts; Marius Kremer; Richard Dronskowski; Ulli Englert
Journal:  Acta Crystallogr C Struct Chem       Date:  2019-08-22       Impact factor: 1.172

4.  Combined X-ray Crystallographic, IR/Raman Spectroscopic, and Periodic DFT Investigations of New Multicomponent Crystalline Forms of Anthelmintic Drugs: A Case Study of Carbendazim Maleate.

Authors:  Alexander P Voronin; Artem O Surov; Andrei V Churakov; Olga D Parashchuk; Alexey A Rykounov; Mikhail V Vener
Journal:  Molecules       Date:  2020-05-21       Impact factor: 4.411

Review 5.  Crystalline Peroxosolvates: Nature of the Coformer, Hydrogen-Bonded Networks and Clusters, Intermolecular Interactions.

Authors:  Alexander G Medvedev; Andrei V Churakov; Petr V Prikhodchenko; Ovadia Lev; Mikhail V Vener
Journal:  Molecules       Date:  2020-12-23       Impact factor: 4.411

6.  Comparison of Proton Acceptor and Proton Donor Properties of H2O and H2O2 in Organic Crystals of Drug-like Compounds: Peroxosolvates vs. Crystallohydrates.

Authors:  Mikhail V Vener; Andrei V Churakov; Alexander P Voronin; Olga D Parashchuk; Sergei V Artobolevskii; Oleg A Alatortsev; Denis E Makhrov; Alexander G Medvedev; Aleksander Filarowski
Journal:  Molecules       Date:  2022-01-22       Impact factor: 4.411

7.  Solving the enigma of weak fluorine contacts in the solid state: a periodic DFT study of fluorinated organic crystals.

Authors:  Elena O Levina; Ivan Y Chernyshov; Alexander P Voronin; Leonid N Alekseiko; Adam I Stash; Mikhail V Vener
Journal:  RSC Adv       Date:  2019-04-23       Impact factor: 4.036

8.  Interplay of π-stacking and inter-stacking interactions in two-component crystals of neutral closed-shell aromatic compounds: periodic DFT study.

Authors:  Sona M Melikova; Alexander P Voronin; Jaroslaw Panek; Nikita E Frolov; Anastasia V Shishkina; Alexey A Rykounov; Peter Yu Tretyakov; Mikhail V Vener
Journal:  RSC Adv       Date:  2020-07-27       Impact factor: 4.036

9.  Vibrational Dynamics of Crystalline 4-Phenylbenzaldehyde from INS Spectra and Periodic DFT Calculations.

Authors:  Mariela M Nolasco; Catarina F Araujo; Pedro D Vaz; Ana M Amado; Paulo Ribeiro-Claro
Journal:  Molecules       Date:  2020-03-18       Impact factor: 4.411

  9 in total

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