Literature DB >> 24606352

Levels of symmetry adapted perturbation theory (SAPT). I. Efficiency and performance for interaction energies.

Trent M Parker1, Lori A Burns1, Robert M Parrish1, Alden G Ryno1, C David Sherrill1.   

Abstract

A systematic examination of the computational expense and accuracy of Symmetry-Adapted Perturbation Theory (SAPT) for the prediction of non-covalent interaction energies is provided with respect to both method [SAPT0, DFT-SAPT, SAPT2, SAPT2+, SAPT2+(3), and SAPT2+3; with and without CCD dispersion for the last three] and basis set [Dunning cc-pVDZ through aug-cc-pV5Z wherever computationally tractable, including truncations of diffuse basis functions]. To improve accuracy for hydrogen-bonded systems, we also include two corrections based on exchange-scaling (sSAPT0) and the supermolecular MP2 interaction energy (δMP2). When considering the best error performance relative to computational effort, we recommend as the gold, silver, and bronze standard of SAPT: SAPT2+(3)δMP2/aug-cc-pVTZ, SAPT2+/aug-cc-pVDZ, and sSAPT0/jun-cc-pVDZ. Their respective mean absolute errors in interaction energy across the S22, HBC6, NBC10, and HSG databases are 0.15 (62.9), 0.30 (4.4), and 0.49 kcal mol(-1) (0.03 h for adenine·thymine complex).

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24606352     DOI: 10.1063/1.4867135

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  63 in total

1.  AMOEBA+ Classical Potential for Modeling Molecular Interactions.

Authors:  Chengwen Liu; Jean-Philip Piquemal; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2019-06-11       Impact factor: 6.006

2.  Computational and Experimental Studies of Inhibitor Design for Aldolase A.

Authors:  Rui Qi; Brandon Walker; Zhifeng Jing; Maiya Yu; Gabriel Stancu; Ramakrishna Edupuganti; Kevin N Dalby; Pengyu Ren
Journal:  J Phys Chem B       Date:  2019-07-03       Impact factor: 2.991

3.  Molecular Dynamics Study of the Hybridization between RNA and Modified Oligonucleotides.

Authors:  Zhifeng Jing; Rui Qi; Marc Thibonnier; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2019-10-09       Impact factor: 6.006

4.  Classical Pauli repulsion: An anisotropic, atomic multipole model.

Authors:  Joshua A Rackers; Jay W Ponder
Journal:  J Chem Phys       Date:  2019-02-28       Impact factor: 3.488

5.  Perspective: Quantum mechanical methods in biochemistry and biophysics.

Authors:  Qiang Cui
Journal:  J Chem Phys       Date:  2016-10-14       Impact factor: 3.488

6.  Chirality-induced spin polarization places symmetry constraints on biomolecular interactions.

Authors:  Anup Kumar; Eyal Capua; Manoj K Kesharwani; Jan M L Martin; Einat Sitbon; David H Waldeck; Ron Naaman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-22       Impact factor: 11.205

7.  A physically grounded damped dispersion model with particle mesh Ewald summation.

Authors:  Joshua A Rackers; Chengwen Liu; Pengyu Ren; Jay W Ponder
Journal:  J Chem Phys       Date:  2018-08-28       Impact factor: 3.488

8.  Machine Learning Force Field Parameters from Ab Initio Data.

Authors:  Ying Li; Hui Li; Frank C Pickard; Badri Narayanan; Fatih G Sen; Maria K Y Chan; Subramanian K R S Sankaranarayanan; Bernard R Brooks; Benoît Roux
Journal:  J Chem Theory Comput       Date:  2017-09-01       Impact factor: 6.006

9.  Strength, character, and directionality of halogen bonds involving cationic halogen bond donors.

Authors:  Kevin E Riley; Khanh-An Tran
Journal:  Faraday Discuss       Date:  2017-10-13       Impact factor: 4.008

10.  Beryllium bonding: insights from the σ- and π-hole analysis.

Authors:  M Esmaïl Alikhani
Journal:  J Mol Model       Date:  2020-04-04       Impact factor: 1.810

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.