Literature DB >> 28489372

Psi4 1.1: An Open-Source Electronic Structure Program Emphasizing Automation, Advanced Libraries, and Interoperability.

Robert M Parrish1, Lori A Burns1, Daniel G A Smith1, Andrew C Simmonett2, A Eugene DePrince3, Edward G Hohenstein4, Uğur Bozkaya5, Alexander Yu Sokolov6, Roberto Di Remigio7, Ryan M Richard1, Jérôme F Gonthier1, Andrew M James8, Harley R McAlexander8, Ashutosh Kumar8, Masaaki Saitow9, Xiao Wang8, Benjamin P Pritchard1, Prakash Verma10, Henry F Schaefer11, Konrad Patkowski12, Rollin A King13, Edward F Valeev8, Francesco A Evangelista10, Justin M Turney11, T Daniel Crawford8, C David Sherrill1.   

Abstract

Psi4 is an ab initio electronic structure program providing methods such as Hartree-Fock, density functional theory, configuration interaction, and coupled-cluster theory. The 1.1 release represents a major update meant to automate complex tasks, such as geometry optimization using complete-basis-set extrapolation or focal-point methods. Conversion of the top-level code to a Python module means that Psi4 can now be used in complex workflows alongside other Python tools. Several new features have been added with the aid of libraries providing easy access to techniques such as density fitting, Cholesky decomposition, and Laplace denominators. The build system has been completely rewritten to simplify interoperability with independent, reusable software components for quantum chemistry. Finally, a wide range of new theoretical methods and analyses have been added to the code base, including functional-group and open-shell symmetry adapted perturbation theory, density-fitted coupled cluster with frozen natural orbitals, orbital-optimized perturbation and coupled-cluster methods (e.g., OO-MP2 and OO-LCCD), density-fitted multiconfigurational self-consistent field, density cumulant functional theory, algebraic-diagrammatic construction excited states, improvements to the geometry optimizer, and the "X2C" approach to relativistic corrections, among many other improvements.

Entities:  

Year:  2017        PMID: 28489372      PMCID: PMC7495355          DOI: 10.1021/acs.jctc.7b00174

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  86 in total

1.  Orbital-optimized third-order Møller-Plesset perturbation theory and its spin-component and spin-opposite scaled variants: application to symmetry breaking problems.

Authors:  Uğur Bozkaya
Journal:  J Chem Phys       Date:  2011-12-14       Impact factor: 3.488

2.  Communication: Practical intramolecular symmetry adapted perturbation theory via Hartree-Fock embedding.

Authors:  Robert M Parrish; Jérôme F Gonthier; Clémence Corminbœuf; C David Sherrill
Journal:  J Chem Phys       Date:  2015-08-07       Impact factor: 3.488

3.  Quasirelativistic theory. II. Theory at matrix level.

Authors:  Wenjian Liu; Werner Kutzelnigg
Journal:  J Chem Phys       Date:  2007-03-21       Impact factor: 3.488

4.  Low-cost evaluation of the exchange Fock matrix from Cholesky and density fitting representations of the electron repulsion integrals.

Authors:  Francesco Aquilante; Thomas Bondo Pedersen; Roland Lindh
Journal:  J Chem Phys       Date:  2007-05-21       Impact factor: 3.488

5.  An efficient linear-scaling CCSD(T) method based on local natural orbitals.

Authors:  Zoltán Rolik; Lóránt Szegedy; István Ladjánszki; Bence Ladóczki; Mihály Kállay
Journal:  J Chem Phys       Date:  2013-09-07       Impact factor: 3.488

6.  Tractability gains in symmetry-adapted perturbation theory including coupled double excitations: CCD+ST(CCD) dispersion with natural orbital truncations.

Authors:  Robert M Parrish; Edward G Hohenstein; C David Sherrill
Journal:  J Chem Phys       Date:  2013-11-07       Impact factor: 3.488

7.  Development and application of the analytical energy gradient for the normalized elimination of the small component method.

Authors:  Wenli Zou; Michael Filatov; Dieter Cremer
Journal:  J Chem Phys       Date:  2011-06-28       Impact factor: 3.488

8.  Density cumulant functional theory from a unitary transformation: N-representability, three-particle correlation effects, and application to O4(+).

Authors:  Alexander Yu Sokolov; Henry F Schaefer; Werner Kutzelnigg
Journal:  J Chem Phys       Date:  2014-08-21       Impact factor: 3.488

9.  A Deterministic Projector Configuration Interaction Approach for the Ground State of Quantum Many-Body Systems.

Authors:  Tianyuan Zhang; Francesco A Evangelista
Journal:  J Chem Theory Comput       Date:  2016-08-16       Impact factor: 6.006

10.  Orbital-optimized coupled-electron pair theory and its analytic gradients: accurate equilibrium geometries, harmonic vibrational frequencies, and hydrogen transfer reactions.

Authors:  Uğur Bozkaya; C David Sherrill
Journal:  J Chem Phys       Date:  2013-08-07       Impact factor: 3.488

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  94 in total

1.  Polymorphism and thermophysical properties of L- and DL-menthol.

Authors:  Vojtěch Štejfa; Ala Bazyleva; Michal Fulem; Jan Rohlíček; Eliška Skořepová; Květoslav Růžička; Andrey V Blokhin
Journal:  J Chem Thermodyn       Date:  2019       Impact factor: 3.178

2.  Driving torsion scans with wavefront propagation.

Authors:  Yudong Qiu; Daniel G A Smith; Chaya D Stern; Mudong Feng; Hyesu Jang; Lee-Ping Wang
Journal:  J Chem Phys       Date:  2020-06-28       Impact factor: 3.488

3.  σ-Hole and σ-lump interactions between gold clusters Aun (n = 2-8) and benzene.

Authors:  Qiang Zhao
Journal:  J Mol Model       Date:  2021-04-24       Impact factor: 1.810

4.  A physically grounded damped dispersion model with particle mesh Ewald summation.

Authors:  Joshua A Rackers; Chengwen Liu; Pengyu Ren; Jay W Ponder
Journal:  J Chem Phys       Date:  2018-08-28       Impact factor: 3.488

5.  Co-operativity in non-covalent interactions in ternary complexes: a comprehensive electronic structure theory based investigation.

Authors:  Shyam Vinod Kumar Panneer; Mahesh Kumar Ravva; Brijesh Kumar Mishra; Venkatesan Subramanian; Narayanasami Sathyamurthy
Journal:  J Mol Model       Date:  2018-08-29       Impact factor: 1.810

6.  Efficient Estimation of Formation Enthalpies for Closed-Shell Organic Compounds with Local Coupled-Cluster Methods.

Authors:  Eugene Paulechka; Andrei Kazakov
Journal:  J Chem Theory Comput       Date:  2018-10-05       Impact factor: 6.006

7.  Cooperativity of hydrogen bonding network in microsolvated biotin, the ligand of avidin class proteins.

Authors:  Aneta Jezierska; Jarosław Jan Panek
Journal:  J Mol Model       Date:  2019-11-26       Impact factor: 1.810

8.  Many-body effect determines the selectivity for Ca2+ and Mg2+ in proteins.

Authors:  Zhifeng Jing; Chengwen Liu; Rui Qi; Pengyu Ren
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-23       Impact factor: 11.205

9.  Design and in Vivo Characterization of A1 Adenosine Receptor Agonists in the Native Ribose and Conformationally Constrained (N)-Methanocarba Series.

Authors:  Dilip K Tosh; Harsha Rao; Amelia Bitant; Veronica Salmaso; Philip Mannes; David I Lieberman; Kelli L Vaughan; Julie A Mattison; Amy C Rothwell; John A Auchampach; Antonella Ciancetta; Naili Liu; Zhenzhong Cui; Zhan-Guo Gao; Marc L Reitman; Oksana Gavrilova; Kenneth A Jacobson
Journal:  J Med Chem       Date:  2019-01-03       Impact factor: 7.446

10.  Beryllium bonding: insights from the σ- and π-hole analysis.

Authors:  M Esmaïl Alikhani
Journal:  J Mol Model       Date:  2020-04-04       Impact factor: 1.810

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