| Literature DB >> 35372651 |
Lars Kasper1,2, Maria Engel1, Jakob Heinzle2, Matthias Mueller-Schrader2, Nadine N Graedel1,3, Jonas Reber1, Thomas Schmid1, Christoph Barmet1, Bertram J Wilm1, Klaas Enno Stephan2,4,5, Klaas P Pruessmann1.
Abstract
We present data collected for the research article "Advances in Spiral fMRI: A High-resolution Study with Single-shot Acquisition" (Kasper et al. 2022). All data was acquired on a 7T ultra-high field MR system (Philips Achieva), equipped with a concurrent magnetic field monitoring setup based on 16 NMR probes. For task-based fMRI, a visual quarterfield stimulation paradigm was employed, alongside physiological monitoring via peripheral recordings. This data collection contains different datasets pertaining to different purposes: (1) Measured magnetic field dynamics (k0, spiral k-space trajectories, 2nd order spherical harmonics, concomitant fields) during ultra-high field fMRI sessions from six subjects, as well as concurrent temperature curves of the gradient coil, to explore MR system and subject-induced variability of field fluctuations and assess the impact of potential correction methods. (2) MR Raw Data, i.e., coil and concurrent encoding magnetic field (trajectory) data, of a single subject, as well as nominal spiral gradient waveforms, precomputed B0 and coil sensitivity maps, to enable testing of alternative image reconstruction approaches for spiral fMRI data. (3) Reconstructed image time series of the same subject alongside behavioral and physiological logfiles, to reproduce the fMRI preprocessing and analysis, as well as figures presented in the research article related to this article, using the published analysis code repository. All data is provided in standardized formats for the respective research area. In particular, ISMRMRD (HDF5) is used to store raw coil data and spiral trajectories, as well as measured field dynamics. Likewise, the NIfTI format is used for all imaging data (anatomical MRI and spiral fMRI, B0 and coil sensitivity maps).Entities:
Keywords: High-resolution fMRI; ISMRMRD; Inverse problems; MR image reconstruction raw data; Magnetic field monitoring; Non-cartesian MRI; Task-based fMRI; Ultra high-field spiral MRI
Year: 2022 PMID: 35372651 PMCID: PMC8968017 DOI: 10.1016/j.dib.2022.108050
Source DB: PubMed Journal: Data Brief ISSN: 2352-3409
List of files in this data collection. ``SPIFI_000[2-7]'' as part of the file name indicates the subject identifier of the corresponding file. Category numbers: (1) Data for Studying Field Dynamics; (2) Data for Image Reconstruction; (3) Data for fMRI Processing, Analysis and Figure Reproduction.
| Category | File | Description |
|---|---|---|
| 1 | GradientCoilTemperature_AllSubjects.zip | Gradient coil temperature curves (.CSV) during whole MRI scanning session for all subjects, accompanied by a README.md markdown file with a more detailed data description |
| 1 | SPIFI_000 [2–7]_FieldDynamics_spiralOut.h5 | Measured magnetic field dynamics of each subject during high-resolution spiral fMRI run, up to 2nd spatial order spherical harmonics, including separate concomitant fields (scanner coordinate system, monitored for every 3rd of 36 slices, volumes 001-100, ISMRMRD file) |
| 2 | SPIFI_0007_MapsForReconstruction.zip | Processed B0 and coil sensitivity maps used for reconstruction, raw B0 map (NIfTI files) |
| 2 | SPIFI_0007_RawData_RotatedToSliceGeometry3D_spiralOut_monitored_singleVolume050.h5 | Single volume raw data (ISMRMRD) for high-resolution spiral, coil signal and monitored trajectory (rotated to 2D reconstruction plane, 36 slices, volume 050) |
| 2 | SPIFI_0007_RawData_RotatedToSliceGeometry3D_spiralOut_monitored_volumes[001-033|034-066|067-100].h5 | Complete fMRI run raw data (ISMRMRD, 3 parts) for high-resolution spiral; coil signal and monitored trajectory (rotated to 2D reconstruction plane, 36 slices, volumes 001-033/034-066/067-100) |
| 2 | SPIFI_0007_RawData_ScannerGeometryHigherOrderFields_spiralOut_monitored_singleVolume050.h5 | Subject SPIFI_0007: Single volume raw data (ISMRMRD) for high-resolution spiral; coil signal and monitored field dynamics (up to 2nd spatial order, separate concomitant fields, scanner coordinate system, 36 slices, volume 050) |
| 1, 2 | SPIFI_0007_RawData_ScannerGeometryHigherOrderFields_spiralOut_nominal_singleVolume050.h5 | Subject SPIFI_0007: Single volume raw data (ISMRMRD) for high-resolution spiral; coil signal and nominal trajectory (separate concomitant fields, scanner coordinate system, 36 slices, volume 050) |
| 3 | SPIFI_0007_ReconstructedImagesAndLogfiles.zip | Subject SPIFI_0007: All reconstructed images and logfiles to reproduce fMRI analysis (NIfTI and ASCII text files) |
| Subject | |
| Specific subject area | |
| Type of data | Magnetic Resonance (MR) Images |
| How the data were acquired | MR Data: 7T MRI, Philips Achieva; quadrature transmit/32-channel head receive array coil (Nova Medical); fMRI data with spiral trajectories |
| Data format | Raw and filtered |
| Description of data collection | Data was acquired from seven healthy volunteers (4 female, mean age 25.7 +/- 4.1 y), who were instructed to lie still in the scanner while fixating a central target during task-based fMRI (block design visual quarterfield stimulation). One subject (SPIFI_0001) was excluded from further analysis due to hardware-related insufficient data quality (reduced signal in receiver coil channels). |
| Data source location | Institution: ETH Zurich (Swiss Federal Institute of Technology) |
| Data accessibility | Repository name: |
| Related research article | L. Kasper, M. Engel, J. Heinzle, M. Mueller-Schrader, N.N. Graedel, J. Reber, T. Schmid, C. Barmet, B.J. Wilm, K.E. Stephan, K.P. Pruessmann, Advances in spiral fMRI: A high-resolution study with single-shot acquisition, NeuroImage. 246 (2022) 118738. |