| Literature DB >> 34908428 |
Michał Rostkowski1, Heide K V Schürner2, Agata Sowińska1, Luis Vasquez1, Martyna Przydacz1, Martin Elsner2, Agnieszka Dybala-Defratyka1.
Abstract
An isotope fractionation analysis of organic groundwater pollutants can assess the remediation at contaminated sites yet needs to consider physical processes as potentially confounding factors. This study explores the predictability of water-air partitioning isotope effects from experiments and computational predictions for benzene and trimethylamine (both H-bond acceptors) as well as chloroform (H-bond donor). A small, but significant, isotope fractionation of different direction and magnitude was measured with ε = -0.12‰ ± 0.07‰ (benzene), εC = 0.49‰ ± 0.23‰ (triethylamine), and εH = 1.79‰ ± 0.54‰ (chloroform) demonstrating that effects do not correlate with expected hydrogen-bond functionalities. Computations revealed that the overall isotope effect arises from contributions of different nature and extent: a weakening of intramolecular vibrations in the condensed phase plus additional vibrational modes from a complexation with surrounding water molecules. Subtle changes in benzene contrast with a stronger coupling between intra- and intermolecular modes in the chloroform-water system and a very local vibrational response with few atoms involved in a specific mode of triethylamine. An energy decomposition analysis revealed that each system was affected differently by electrostatics and dispersion, where dispersion was dominant for benzene and electrostatics dominated for chloroform and triethylamine. Interestingly, overall stabilization patterns in all studied systems originated from contributions of dispersion rather than other energy terms.Entities:
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Year: 2021 PMID: 34908428 PMCID: PMC8724799 DOI: 10.1021/acs.jpcb.1c05574
Source DB: PubMed Journal: J Phys Chem B ISSN: 1520-5207 Impact factor: 2.991
Scheme 1
Figure 1(a) Modified headspace vial. (b) Schematic illustration of the stepwise water–air partitioning: (1) equilibration in agitator; (2) automated headspace sampling; (3) exchange of headspace with gentle nitrogen stream; (4) repeat (1–3).
Figure 2Carbon isotope data of benzene, triethylamine, and trichloromethane as well as hydrogen isotope data of trichloromethane determined from a CHCl3/CDCl3 mixture measured during water–air partitioning. For a carbon isotope analysis, gray lines represent the isotopic composition of the standard determined by EA-IRMS. For hydrogen isotope analysis, the gray line denotes the measured initial average. Dotted lines and error bars represent the precision of carbon (±0.5‰ for benzene and TEA (NEt3), ±1‰ for TCM) and hydrogen (±2.6‰) isotope analyses. Reported enrichment factors ε with 95% CI were obtained according to the Rayleigh equation (eq ) by a linear regression of isotope values vs the logarithm of concentrations as represented in the panels to the right.
Carbon Isotope Effects (ε, ‰) for Equilibrium Water–Air Partitioning of Benzene Dissolved in Aqueous Solution Obtained from Calculations using Benzene-Water Clusters Prepared Manually with (Mixed) and without (Micro) Additional Continuum Solvent Modela
| DFT
functional | |||||||
|---|---|---|---|---|---|---|---|
| B2PLYP-D3 | B3LYP | M06-2X | |||||
| solvation model | No. of water molecules | smaller BS | larger BS | smaller BS | larger BS | smaller BS | larger BS |
| micro | –0.35 | –0.22 | 0.18 | 0.03 | 0.25 | 0.06 | |
| –0.15 | –0.15 | 0.02 | –0.10 | 0.04 | |||
| –0.59 | –0.32 | 0.26 | 0.02 | 0.27 | –0.04 | ||
| –0.62 | –0.27 | 0.23 | 0.09 | 0.33 | 0.07 | ||
| –0.87 | –0.30 | 0.38 | 0.13 | 0.01 | 0.07 | ||
| –0.84 | –0.32 | 0.15 | –0.03 | –0.03 | –0.09 | ||
| –0.79 | 0.29 | 0.45 | 0.30 | ||||
| –0.88 | 0.10 | –0.05 | –0.10 | 0.02 | |||
| mixed | –0.22 | 0.04 | 0.46 | 0.30 | 0.40 | 0.38 | |
| 0.36 | 0.03* | 0.36 | 0.31 | 0.37 | 0.29 | ||
| –0.49 | 0.47 | 0.28 | 0.51 | 0.27 | |||
| –0.49 | –0.08 | 0.44 | 0.65 | 0.14 | |||
| –0.54 | 0.41 | 0.27 | 0.57 | 0.12 | |||
| –0.55 | 0.42 | 0.26 | 0.28 | 0.01 | |||
| –0.46 | 0.45 | 0.16 | |||||
| –0.62 | 0.42 | 0.26 | 0.32 | 0.24 | |||
Smaller BS, smaller basis set, 6-31+G(d,p); Larger BS, larger basis set, 6-311+G(2df,2p); opt–geometry preoptimized with the PM3 method; side–water molecule was located at a side of benzene aromatic ring; (*) water molecule initially located on the side of the benzene relocated above the aromatic system.
Carbon Isotope Effects (ε, ‰) for Equilibrium Water–Air Partitioning of Benzene Dissolved in Aqueous Solution Obtained from Calculations using Benzene-Water Clusters Prepared by Cutting out Solvent Molecules from Water Box, with (Mixed) and without (Micro) Additional Continuum Solvent Modela
| DFT
functional | |||||||
|---|---|---|---|---|---|---|---|
| B2PLYP-D3 | B3LYP | M06-2X | |||||
| solvation model | No. of water molecules | smaller BS | larger BS | smaller BS | larger BS | smaller BS | larger BS |
| micro | –0.77 | –0.45 | 0.06 | 0.09 | 0.03 | –0.19 | |
| –0.95 | –0.26 | 0.39 | 0.15 | 0.45 | –0.26 | ||
| 0.19 | 0.13 | –0.05 | 0.26 | ||||
| 0.13 | –0.04 | ||||||
| mixed | –0.43 | –0.15 | 0.35 | 0.29 | 0.48 | 0.10 | |
| 0.42 | 0.40 | 0.14 | |||||
| 0.42 | |||||||
| 0.18 | 0.01 | ||||||
Smaller BS, smaller basis set, 6-31+G(d,p); Larger BS, larger basis set, 6-311+G(2df,2p).
Figure 3Geometries of benzene-water microsolvation models at the B2PLYPD3/6-31+G(d,p) theory level, where in the initial/final structures water was located (a) on a side (equatorial region) or (b) above/below the solute (axial region).
Carbon Isotope Effects (ε, ‰) for Equilibrium Water–Air Partitioning of Chloroform Dissolved in Aqueous Solution Obtained from Calculations Using Chloroform–Water Clusters Prepared Manually with (Mixed) and without (Micro) Additional Continuum Solvent Modela
| DFT functional | |||||||
|---|---|---|---|---|---|---|---|
| B2PLYP-D3 | B3LYP | M06-2X | |||||
| solvation model | No. of water molecules | smaller BS | larger BS | smaller BS | larger BS | smaller BS | larger BS |
| micro | 0.33 | 0.31 | 0.55 | –0.15 | –0.14 | ||
| 0.43 | 0.25 | 0.44 | 0.39 | 0.32 | –0.33 | ||
| 0.43 | 0.25 | 1.19 | 0.39 | 0.05 | 0.21 | ||
| mixed | 4.14 | 4.19 | 4.6 | 4.19 | 3.34 | 2.77 | |
| 3.98 | 3.59 | 3 | 3.54 | 3.2 | 2.4 | ||
| 3.9 | 4.38 | 4.05 | 3.16 | 2.67 | |||
Smaller BS, smaller basis set, 6-31+G(d,p); Larger BS, larger basis set, 6-311+G(2df,2p); opt—geometry preoptimized with the PM3 method.
Carbon Isotope Effects (ε, ‰) for Equilibrium Water–Air Partitioning of Chloroform Dissolved in Aqueous Solution Obtained from Calculations Using Chloroform–Water Clusters Prepared by Cutting Out Solvent Molecules from Water Box with (Mixed) and without (Micro) Additional Continuum Solvent Modela
| DFT
functional | |||||||
|---|---|---|---|---|---|---|---|
| B2PLYP-D3 | B3LYP | M06-2X | |||||
| solvation model | No. of water molecules | smaller BS | larger BS | smaller BS | larger BS | smaller BS | larger BS |
| micro | 0.51 | 0.58 | 1.73 | 1.61 | –0.27 | –0.26 | |
| 0.79 | 0.79 | 1.26 | 1.85 | 0.28 | 0.03 | ||
| 0.74 | 0.9 | 1.23 | 0.67 | ||||
| 0.95 | 0.82 | 0.54 | |||||
| 0.89 | 1.18 | 0.3 | |||||
| 0.65 | 1.33 | 1.23 | |||||
| mixed | 3.51 | 3.82 | 4.22 | 4 | 2.68 | 2.59 | |
| 3.73 | 4.17 | 2.84 | 2.66 | ||||
| 3.47 | 4.01 | 2.63 | |||||
| 3.15 | 4.14 | ||||||
| 2.73 | |||||||
| 3.47 | 2.49 | ||||||
Smaller BS, smaller basis set, 6-31+G(d,p); Larger BS, larger basis set, 6-311+G(2df,2p).
Carbon Isotope Effects (ε, ‰) for Equilibrium Water–Air Partitioning of Triethylamine Dissolved in Aqueous Solution Obtained from Calculations Using Triethylamine–Water Clusters Prepared Manually with (Mixed) and without (Micro) Additional Continuum Solvent Modela
| DFT
functional | ||||||
|---|---|---|---|---|---|---|
| B2PLYP-D3 | B3LYP | M06-2X | ||||
| solvation model | No. of water molecules | smaller BS | smaller BS | larger BS | smaller BS | larger BS |
| micro | 1 | –0.25/(−0.27)* | –0.06 | –0.21 | –0.21 | –0.17 |
| 4 | –0.33 | –0.19 | –0.24 | –0.32 | ||
| 4opt | –0.41 | –0.24 | –0.27 | –0.59 | –0.53 | |
| 5 | –0.25 | –0.16 | –0.37 | –0.51 | –0.49 | |
| 5opt | –0.4 | –0.17 | –0.38 | |||
| mixed | 1 | 0.01/(0.01)* | 0.19 | 0.21 | 0.04 | 0.02 |
| 4 | 0.07 | 0.19 | 0.19 | 0.04 | ||
| 4opt | –0.15 | –0.02 | –0.02 | –0.12 | –0.17 | |
| 5 | 0.06 | 0.19 | 0.07 | |||
| 5ppt | –0.18 | 0.03 | –0.03 | –0.29 | ||
Smaller BS, smaller basis set, 6-31+G(d,p); Larger BS, larger basis set, 6-311+G(2df,2p); opt–geometry preoptimized with the PM3 method; (*) result obtained using larger basis set.
Carbon Isotope Effects (ε, ‰) for Equilibrium Water–Air Partitioning of Triethylamine Dissolved in Aqueous Solution Obtained from Calculations using Triethylamine–Water Clusters Prepared by Cutting Out Solvent Molecules from Water Box with (Mixed) and without (Micro) Additional Continuum Solvent Modela
| DFT
Functional | |||||||
|---|---|---|---|---|---|---|---|
| B2PLYPD3 | B3LYP | M06-2X | |||||
| solvationmodel | No. of water molecules | smaller BS | larger BS | smaller BS | larger BS | smaller BS | larger BS |
| micro | –0.39 | –0.38 | –0.22 | –0.21 | –0.36 | ||
| –0.35 | –0.43 | –0.27 | –0.27 | –0.43 | –0.43 | ||
| –0.23 | 0.13 | 0.05 | –0.22 | 0.02 | |||
| –0.24 | –0.07 | –0.23 | –0.28 | –0.07 | –0.08 | ||
| –0.40 | –0.21 | –0.35 | –0.21 | –0.44 | |||
| –0.47 | –0.20 | –0.31 | –0.64 | –0.70 | |||
| mixed | 0.45 | 0.4 | 0.42 | 0.36 | 0.45 | 0.39 | |
| 0.37 | 0.37 | 0.41 | 0.32 | ||||
| –0.12 | –0.20 | 0.37 | 0.38 | 0.36 | |||
| 0.02 | 0.04 | 0.36 | 0.01 | 0.33 | |||
| –0.30 | 0.04 | 0.37 | –0.11 | –0.16 | |||
| –0.06 | 0.36 | –0.17 | –0.10 | ||||
Smaller BS, smaller basis set, 6-31+G(d,p); Larger BS, larger basis set, 6-311+G(2df,2p).
Figure 4Geometries of trichloromethane-water microsolvation models resulted in the best agreement with the experimental values of IE and obtained at the B3LYP/6-31+(d,p) theory level. The numbers denote the number of water molecules in a model. “opt” denotes the preoptimization step with PM3 prior to DFT calculations.