Literature DB >> 20614953

Density fitting of intramonomer correlation effects in symmetry-adapted perturbation theory.

Edward G Hohenstein1, C David Sherrill.   

Abstract

Symmetry-adapted perturbation theory (SAPT) offers insight into the nature of intermolecular interactions. In addition, accurate energies can be obtained from the wave function-based variant of SAPT provided that intramonomer electron correlation effects are included. We apply density-fitting (DF) approximations to the intramonomer correlation corrections in SAPT. The introduction of this approximation leads to an improvement in the computational cost of SAPT by reducing the scaling of certain SAPT terms, reducing the amount of disk I/O, and avoiding the explicit computation of certain types of MO integrals. We have implemented all the intramonomer correlation corrections to SAPT through second-order under the DF approximation. Additionally, leading third-order terms are also implemented. The accuracy of this truncation of SAPT is tested against the S22 test set of Hobza and co-workers [Phys. Chem. Chem. Phys. 8, 1985 (2006)]. When the intramonomer corrections to dispersion are included in SAPT, a mean absolute deviation of 0.3-0.4 kcal mol(-1) is observed for the S22 test set when using an aug-cc-pVDZ basis. The computations on the adenine-thymine complexes in the S22 test set with an aug-cc-pVDZ basis represent the largest SAPT computations to date that include this degree of intramonomer correlation. Computations of this size can now be performed routinely with our newly developed DF-SAPT program.

Entities:  

Year:  2010        PMID: 20614953     DOI: 10.1063/1.3451077

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  35 in total

1.  The assessment and application of an approach to noncovalent interactions: the energy decomposition analysis (EDA) in combination with DFT of revised dispersion correction (DFT-D3) with Slater-type orbital (STO) basis set.

Authors:  Wei Gao; Huajie Feng; Xiaopeng Xuan; Liuping Chen
Journal:  J Mol Model       Date:  2012-05-29       Impact factor: 1.810

2.  Computational and Experimental Studies of Inhibitor Design for Aldolase A.

Authors:  Rui Qi; Brandon Walker; Zhifeng Jing; Maiya Yu; Gabriel Stancu; Ramakrishna Edupuganti; Kevin N Dalby; Pengyu Ren
Journal:  J Phys Chem B       Date:  2019-07-03       Impact factor: 2.991

3.  Energetic factors determining the binding of type I inhibitors to c-Met kinase: experimental studies and quantum mechanical calculations.

Authors:  Zhe Yu; Yu-chi Ma; Jing Ai; Dan-qi Chen; Dong-mei Zhao; Xin Wang; Yue-lei Chen; Mei-yu Geng; Bing Xiong; Mao-sheng Cheng; Jing-Kang Shen
Journal:  Acta Pharmacol Sin       Date:  2013-09-23       Impact factor: 6.150

4.  Molecular Dynamics Study of the Hybridization between RNA and Modified Oligonucleotides.

Authors:  Zhifeng Jing; Rui Qi; Marc Thibonnier; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2019-10-09       Impact factor: 6.006

5.  A physically grounded damped dispersion model with particle mesh Ewald summation.

Authors:  Joshua A Rackers; Chengwen Liu; Pengyu Ren; Jay W Ponder
Journal:  J Chem Phys       Date:  2018-08-28       Impact factor: 3.488

6.  Cooperativity of hydrogen bonding network in microsolvated biotin, the ligand of avidin class proteins.

Authors:  Aneta Jezierska; Jarosław Jan Panek
Journal:  J Mol Model       Date:  2019-11-26       Impact factor: 1.810

7.  Absolute ion hydration free energy scale and the surface potential of water via quantum simulation.

Authors:  Yu Shi; Thomas L Beck
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-17       Impact factor: 11.205

8.  Psi4 1.1: An Open-Source Electronic Structure Program Emphasizing Automation, Advanced Libraries, and Interoperability.

Authors:  Robert M Parrish; Lori A Burns; Daniel G A Smith; Andrew C Simmonett; A Eugene DePrince; Edward G Hohenstein; Uğur Bozkaya; Alexander Yu Sokolov; Roberto Di Remigio; Ryan M Richard; Jérôme F Gonthier; Andrew M James; Harley R McAlexander; Ashutosh Kumar; Masaaki Saitow; Xiao Wang; Benjamin P Pritchard; Prakash Verma; Henry F Schaefer; Konrad Patkowski; Rollin A King; Edward F Valeev; Francesco A Evangelista; Justin M Turney; T Daniel Crawford; C David Sherrill
Journal:  J Chem Theory Comput       Date:  2017-06-06       Impact factor: 6.006

9.  Psi4 1.4: Open-source software for high-throughput quantum chemistry.

Authors:  Daniel G A Smith; Lori A Burns; Andrew C Simmonett; Robert M Parrish; Matthew C Schieber; Raimondas Galvelis; Peter Kraus; Holger Kruse; Roberto Di Remigio; Asem Alenaizan; Andrew M James; Susi Lehtola; Jonathon P Misiewicz; Maximilian Scheurer; Robert A Shaw; Jeffrey B Schriber; Yi Xie; Zachary L Glick; Dominic A Sirianni; Joseph Senan O'Brien; Jonathan M Waldrop; Ashutosh Kumar; Edward G Hohenstein; Benjamin P Pritchard; Bernard R Brooks; Henry F Schaefer; Alexander Yu Sokolov; Konrad Patkowski; A Eugene DePrince; Uğur Bozkaya; Rollin A King; Francesco A Evangelista; Justin M Turney; T Daniel Crawford; C David Sherrill
Journal:  J Chem Phys       Date:  2020-05-14       Impact factor: 3.488

10.  An optimized charge penetration model for use with the AMOEBA force field.

Authors:  Joshua A Rackers; Qiantao Wang; Chengwen Liu; Jean-Philip Piquemal; Pengyu Ren; Jay W Ponder
Journal:  Phys Chem Chem Phys       Date:  2016-12-21       Impact factor: 3.676

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