Literature DB >> 15867152

Nonpolar solutes enhance water structure within hydration shells while reducing interactions between them.

Tanya M Raschke1, Michael Levitt.   

Abstract

The origins of the hydrophobic effect are widely thought to lie in structural changes of the water molecules surrounding a nonpolar solute. The spatial distribution functions of the water molecules surrounding benzene and cyclohexane computed previously from molecular dynamics simulations show a high density first hydration shell surrounding both solutes. In addition, benzene showed a strong preference for hydrogen bonding with two water molecules, one to each face of the benzene ring. The position data alone, however, do not describe the majority of orientational changes in the water molecules in the first hydration shells surrounding these solutes. In this paper, we measure the changes in orientation of the water molecules with respect to the solute through spatial orientation functions as well as radial/angular distribution functions. These data show that the water molecules hydrogen bonded to benzene have a strong orientation preference, whereas those around cyclohexane show a weaker tendency. In addition, the water-water interactions within and between the first two hydration shells were measured as a function of distance and "best" hydrogen bonding angle. Water molecules within the first hydration shell have increased hydrogen bonding structure; water molecules interacting across shell 1 and shell 2 have reduced hydrogen bonding structure.

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Year:  2005        PMID: 15867152      PMCID: PMC1100774          DOI: 10.1073/pnas.0500225102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  11 in total

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Authors:  T M Raschke; J Tsai; M Levitt
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-15       Impact factor: 11.205

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Journal:  Phys Rev Lett       Date:  2000-03-27       Impact factor: 9.161

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Journal:  Biophys Chem       Date:  1999-04-05       Impact factor: 2.352

Review 4.  Hydrophobic effects and modeling of biophysical aqueous solution interfaces.

Authors:  Lawrence R Pratt; Andrew Pohorille
Journal:  Chem Rev       Date:  2002-08       Impact factor: 60.622

Review 5.  Voronoi and Voronoi-related tessellations in studies of protein structure and interaction.

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Journal:  Curr Opin Struct Biol       Date:  2004-04       Impact factor: 6.809

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Journal:  Science       Date:  1994-08-26       Impact factor: 47.728

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Journal:  Nature       Date:  1998-04-16       Impact factor: 49.962

8.  Molecular segregation observed in a concentrated alcohol-water solution.

Authors:  S Dixit; J Crain; W C K Poon; J L Finney; A K Soper
Journal:  Nature       Date:  2002-04-25       Impact factor: 49.962

9.  Benzene forms hydrogen bonds with water.

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Journal:  Science       Date:  1992-08-14       Impact factor: 47.728

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Authors:  Kelly R Gallagher; Kim A Sharp
Journal:  J Am Chem Soc       Date:  2003-08-13       Impact factor: 15.419

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  22 in total

1.  Predicting hydration free energies of polychlorinated aromatic compounds from the SAMPL-3 data set with FiSH and LIE models.

Authors:  Traian Sulea; Enrico O Purisima
Journal:  J Comput Aided Mol Des       Date:  2011-12-22       Impact factor: 3.686

2.  Dynamic hydration shell restores Kauzmann's 1959 explanation of how the hydrophobic factor drives protein folding.

Authors:  Robert L Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-25       Impact factor: 11.205

3.  Simulations of RNA base pairs in a nanodroplet reveal solvation-dependent stability.

Authors:  Michael T Sykes; Michael Levitt
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-16       Impact factor: 11.205

Review 4.  A review about nothing: are apolar cavities in proteins really empty?

Authors:  Brian W Matthews; Lijun Liu
Journal:  Protein Sci       Date:  2009-03       Impact factor: 6.725

5.  Mechanism of the hydrophobic effect in the biomolecular recognition of arylsulfonamides by carbonic anhydrase.

Authors:  Phillip W Snyder; Jasmin Mecinovic; Demetri T Moustakas; Samuel W Thomas; Michael Harder; Eric T Mack; Matthew R Lockett; Annie Héroux; Woody Sherman; George M Whitesides
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-19       Impact factor: 11.205

6.  Remarkable patterns of surface water ordering around polarized buckminsterfullerene.

Authors:  Gaurav Chopra; Michael Levitt
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-15       Impact factor: 11.205

7.  Origin of hydrophobicity and enhanced water hydrogen bond strength near purely hydrophobic solutes.

Authors:  Joze Grdadolnik; Franci Merzel; Franc Avbelj
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-27       Impact factor: 11.205

8.  Natures of benzene-water and pyrrole-water interactions in the forms of σ and π types: theoretical studies from clusters to liquid mixture.

Authors:  Wei Gao; Jiqing Jiao; Huajie Feng; Xiaopeng Xuan; Liuping Chen
Journal:  J Mol Model       Date:  2012-11-23       Impact factor: 1.810

9.  Electrostatic contribution from solvent in modulating single-walled carbon nanotube association.

Authors:  Shu-Ching Ou; Sandeep Patel
Journal:  J Chem Phys       Date:  2014-09-21       Impact factor: 3.488

10.  How hydrophobic buckminsterfullerene affects surrounding water structure.

Authors:  Dahlia R Weiss; Tanya M Raschke; Michael Levitt
Journal:  J Phys Chem B       Date:  2008-02-15       Impact factor: 2.991

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