| Literature DB >> 34806875 |
Ana M Salmerón1, Ana I Tristán1, Ana C Abreu1, Ignacio Fernández1.
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Year: 2021 PMID: 34806875 PMCID: PMC8756394 DOI: 10.1021/acs.analchem.1c04360
Source DB: PubMed Journal: Anal Chem ISSN: 0003-2700 Impact factor: 6.986
Figure 1Basic steps of a NMR-based metabolomics study through the fingerprinting method: (A) baseline correction, phase correction, and calibration to the reference, which is usually placed at 0 ppm, (B) NMR spectra normalization to total intensity, (C) bucketing of the spectral data, obtaining a data matrix, which can be subjected to scaling and centering, (D) statistical data analysis, distinguishing between multivariate and univariate approaches, and (E) the analysis of disturbed metabolic routes.
Figure 2Connectivity network visualization obtained by using the program VOSviewer selecting the co-occurrence option. The data set was generated from Web of Science by introducing the keywords “metabolomics” or “metabonomics” and “colorectal cancer” or “colon cancer” or “colorectum cancer”.
Figure 3Annual number of publications from 2004 to October 2021. The data set was generated from ISI Web of Science by introducing the keywords “metabolomics” or “metabonomics” and “colorectal cancer” or “colon cancer” or “colorectum cancer” and “NMR” or “nuclear magnetic resonance”.
Figure 4Network of citations obtained by using the program CitNetExplorer. The data set was generated from Web of Science by introducing the keywords “metabolomics” or “metabonomics” and “colorectal cancer” or “colon cancer” or “colorectum cancer” and “NMR” or “nuclear magnetic resonance”.
List of Metabolomics Studies of Colorectal Cancer Covered in This Manuscript until June 2021 in Chronological Ordera
| reference | technique | NMR probehead | NMR sample size | sample volume | multivariate analysis | aim | conclusions |
|---|---|---|---|---|---|---|---|
| Ludwig et al.[ | 1H NMR (800 MHz) | HCN cryogenic probe | 38 CRC, | - | PCA, PLS-DA | identification of CRC and adenoma-positive biomarkers | higher levels of Lac, Pyr, Acet, Aco, and 3-HB in CRC samples |
| Backshall et al.[ | 1H NMR (600 MHz) | 5 mm triple resonance TXI probe | 52 patients | 200 μL | PLS-DA | prediction of toxic effects on patients undergoing treatment with capecitabine | differences in the serum metabolic profile between pretreatment and subsequent toxicity; the lipid profile provides information on the risk and possible severity of toxicity |
| Bertini et al.[ | 1H NMR (600 MHz) | CPTPI probe | 153 metastatic CRC, 139 controls | 300 μL | PLS-DA, SVM, CA | identification of metastatic CRC biomarkers and predict overall patient survival | lower serum levels in CRC samples of Ala, Cit, Leu, Pyr, Tyr, and Val and higher content of 3-HB, Acet, Form, Glo, lipids, GlyP, Phe, and Pro; this could lead to a signature to predict overall survival |
| Farshidfar et al.[ | GC-MS, 1H NMR (600 MHz) | 5 mm triple resonance TXI probe | 42 coloregional CRC, 45 liver-only CRC, 25 extrahepatic metastases | - | PCA, OPLS-DA | identification of occult metastases biomarkers in CRC samples | serum metabolic profile changes with metastases and with sites of disease |
| Zamani et al.[ | 1H NMR (500 MHz) | - | 33 CRC, 33 controls | 600 μL | PCA, PLS-DA | identification of CRC biomarkers | decrease in the levels of Pyx, Oro, AdeH, Pya, Glyc, β-Leu, MetCy, Tau, 3-HB, AcChol, 3-HV, Fuc, Chol, and PCar and increase in Gly in CRC samples; the LDA/DCA ratio is considered a possible CRC biomarker |
| Chen et al.[ | 1H NMR (500 MHz) | HCN cryogenic probe | 44 polyps, 58 controls | 530 μL | seemingly unrelated regression | identification of polyps-associated biomarkers | eleven groups of metabolites showed alterations between patients with polyps and healthy controls |
| Deng et al.[ | LC-MS, 1H NMR (500 MHz) | 5 mm triple resonance TXI probe | 28 CRC, 44 polyps, 55 controls | 530 μL | PLS-DA | identification of CRC- and polyps-associated biomarkers | higher levels of Glc, lower levels of Ade, and alterations in Pyr and Gln levels in CRC samples; decrease in Ort and increase in Ade in polyp samples |
| alterations in Fum, Cit, Oxa, Lin, and lipids in both groups | |||||||
| Vahabi et al.[ | 1H NMR (500 MHz) | - | 8 CRC stage 0-I, 8 CRC stage I–IV | 600 μL | OPLS-DA | identification of CRC biomarkers in different disease stages (0 to I and II to VI) | lower levels of Pyx, increase in Gly, Cholt, Tau, CholEs, and Den in the CRC group (II to IV stages) |
| Gu et al.[ | 1H NMR (600 MHz) | - | 40 CRC, 32 polyps, 39 controls | 300 μL | PCA, PLS-DA, OPLS-DA, RF, SVM | identification of CRC and polyps-associated biomarkers | increase in the levels of Lac, Gly, Ser, Chol, and 3-HB and decrease of Cit and Suc in CRC samples; higher levels of Lac, Glut, Chol, PUFA, and NaGly and lower levels of Acet, Glo, Gln, Ala, and Asp in polyps samples |
| Acet/Glo and Lac/Cit ratios considered as possible polyps and CRC biomarkers, respectively | |||||||
| Di Donato et
al.[ | 1H NMR (600 MHz) | - | 65 CRC relapse free, 29 relapsed, 75 metastatic CRC | 1 mL | PCA-CA-kNN | prediction of prognosis and identification of metastatic CRC biomarkers | lower levels of Gln and His in the metastatic CRC group |
Symbol: “-” denotes studies where the specific information was not provided.
Colorectal cancer.
In samples corresponding to colorectal cancer, abbreviations are as follows. Acet: acetate; Aco: acetoacetate; AcChol: 7-acetocholesterol; Ade: adenosine; AdeH: s-adenosylhomocysteine; Ala: alanine; Asp: aspartate; Cholt: cholesterol; CholEs: cholesteryl ester; Chol: choline; Cit: citrate; DCA: deoxycholic acid; Den: deoxyinosine; For: formate; Fuc: 3-fucose; Fum: fumarate; Glc: glucose; Glut: glutamate; Gln: glutamine; Glo: glycerol; Gly: glycine; Glyc: glycocholic acid; GlyP: glycoproteins; His: histidine; 3-HB: 3-hydroxybutyrate; 3-HV: 3-hydroxyisovaleric acid; Lac: lactate; Leu: leucine; Lin: linolenic acid; LDA: lithocholic acid; MetCy: 5-methylcytidine; NaGly: N-acetyl glycoproteins; Ort: oroate; Oro: orotidine; Oxa: oxaloacetate; PCar: l-palmitoylcarnitine; Phe: phenylalanine; Pro: proline; PUFA: polyunsaturated fatty acids; Pya: pyridoxamine; Pyx: pyridoxine; Pyr: pyruvate; Ser: serine; Suc: succinate; Tau: taurocholic acid; Tyr: tyrosine.
List of Metabolomics Studies of Colorectal Cancer in Other Matrices until March 2019 in Chronological Ordera
| reference | technique | matrix | NMR probehead | NMR sample size | sample volume | multivariate analysis | aim | conclusions |
|---|---|---|---|---|---|---|---|---|
| Bezabeh et al.[ | 1H NMR (400 MHz) | fecal extracts | flow probe | 111 CRC, | 500 μL | LDS (linear discriminant analysis) | noninvasive detection of CRC | identified spectral differences important for the detection of colorectal cancer |
| Chan et al.[ | 1H NMR (600 MHz), GC-MS | colon mucosae | HR-MAS probe | 31 patients | 10 mg | OPLS-DA | description of metabolic signatures that discriminate malignant from normal mucosae | higher levels of Lac, Gly, PC, PE, Urd, fecal bile acids, and Cholt and lower levels of Glc, ArA, Mal, Fum, and lipids in CRC samples |
| Piotto et al.[ | 1H NMR (500 MHz) | tumoral and healthy tissues | 4 mm double resonance (1H, 13C) gradient HR-MAS probe | 44 patients | 15/20 mg | PCA, PLS-DA | characterization of the metabolic fingerprint of tumoral and healthy tissue samples from patients affected by primary colorectal adenocarcinoma | elevated amounts of Tau, Glu, Asp, and Lac in colorectal biopsy tissues and a high amount of MI and β-in healthy tissues |
| Monleón et al.[ | 1H NMR (600 MHz) | fecal water extracts (stool samples) | triple-resonance 1H/13C/15N probe | 21 CRC, 11 controls | 500 μL | PCA | identification of potential diagnostic markers of CRC | a low SCFA (Acet and But) concentration seems to be the most effective marker for CRC.; Pro and Cys also displayed a correlation with the disease |
| Jiménez
et al.[ | 1H NMR (400 MHz) | tumor and adjacent mucosa | TBI HR-MAS probe | 26 patients | 10 mg | OPLS-DA | find potential biomarkers of CRC in both matrices | discrimination between T- and N-stages; increased levels of Tau, Isogln, Chol, Lac, Phe, and Tyr, and decrease in lipids and triglycerides for tumor tissues |
| discrimination between T- and N-stages and accurate predictive capability of 5-year survival for adjacent mucosa | ||||||||
| Wang et al.[ | 1H NMR (400 MHz) | urine | - | 55 CRC, 40 controls | 600 μL | PCA, OPLS-DA | find metabolic variations between CRC and healthy controls and differentiate between CRC stages | 16 potential biomarkers were identified for CRC; metabolic profiles from early stage CRC and esophageal cancer patients were also distinguishable |
| Kim et al.[ | 1H NMR (500 MHz) | urine | - | 92 CRC, 156 controls | 500 μL | OPLS-DA | explore the potential of urine NMR metabolomics as a diagnostic tool for early detection of CRC, compare patients with CRC neoplasia at various stages and healthy controls | preinvasive CRC neoplasia, advanced CRC, and healthy controls groups were statistically discriminated with high sensitivity and specificity; Tau, Ala, and 3-AiB were good discriminators for CRC patients |
Symbol: “-” denotes studies where the specific information was not provided.
Colorectal cancer.
In samples corresponding to colorectal cancer, abbreviations are as follows. Ala: alanine; 2-AB: 2-aminobutyrate; 3-AiB: 3-aminoisobutyrate; ArA: arachidonic acid; Acet: acetate; Asp: aspartate; But: butyrate; Chol: choline; Cholt: cholesterol; Cit: citrate; Cr: creatine; Cys: cysteine; Fum: fumarate; Glc: glucose; Gln: glutamine; Glu: glutamate; Gly: glycine; Hip: hippurate; Isogln: isoglutamine; Kyn: kynurenate; Lac: lactate; Mal: malate; MI: myo-inositol; Myr: myristate; p-cre: p-cresol; PEG: polyethylene glycol; PC: phosphocholine; PE: phosphoethanolamine; Phe: phenylalanine; Pro: proline; Put: putrescine; SCFA: short-chain fatty acids; Tau: taurine; TCA: tricarboxylic acids; Tyr: tyrosine; Urd: uridine.
Figure 5Biomarkers as a function of the matrix under study for colorectal cancer. Arrows pointing up or down reveal upregulated and downregulated biomarkers, respectively. Arrows pointing up and down simultaneously illustrate contradictory results on biomarkers that were reported to increase or decrease in different studies. Metabolites in bold have been detected in more than one matrix, and their molecular structures are given in the box below.