Literature DB >> 27134822

Biomarker Discovery and Translation in Metabolomics.

G A Nagana Gowda1, D Raftery2.   

Abstract

The multifaceted field of metabolomics has witnessed exponential growth in both methods development and applications. Owing to the urgent need, a significant fraction of research investigations in the field is focused on understanding, diagnosing and preventing human diseases; hence, the field of biomedicine has been the major beneficiary of metabolomics research. A large body of literature now documents the discovery of numerous potential biomarkers and provides greater insights into pathogeneses of numerous human diseases. A sizable number of findings have been tested for translational applications focusing on disease diagnostics ranging from early detection, to therapy prediction and prognosis, monitoring treatment and recurrence detection, as well as the important area of therapeutic target discovery. Current advances in analytical technologies promise quantitation of biomarkers from even small amounts of bio-specimens using non-invasive or minimally invasive approaches, and facilitate high-throughput analysis required for real time applications in clinical settings. Nevertheless, a number of challenges exist that have thus far delayed the translation of a majority of promising biomarker discoveries to the clinic. This article presents advances in the field of metabolomics with emphasis on biomarker discovery and translational efforts, highlighting the current status, challenges and future directions.

Entities:  

Keywords:  Biomarkers; NMR spectroscopy; cancer; cardiovascular disease; commercialization; diabetes; diagnostics; inborn errors of metabolism; mass spectrometry; metabolomics; neurological disorder; statistical analysis; translation; validation

Year:  2013        PMID: 27134822      PMCID: PMC4848463          DOI: 10.2174/2213235X113019990005

Source DB:  PubMed          Journal:  Curr Metabolomics        ISSN: 2213-235X


  117 in total

Review 1.  Metabolomics as a tool for cardiac research.

Authors:  Julian L Griffin; Helen Atherton; John Shockcor; Luigi Atzori
Journal:  Nat Rev Cardiol       Date:  2011-09-20       Impact factor: 32.419

2.  Global metabolic profiling procedures for urine using UPLC-MS.

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Journal:  Nat Protoc       Date:  2010-06       Impact factor: 13.491

3.  Quantification of plasma lipoproteins by proton nuclear magnetic resonance spectroscopy.

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Journal:  Clin Chem       Date:  1991-03       Impact factor: 8.327

Review 4.  Lipoprotein particle analysis by nuclear magnetic resonance spectroscopy.

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Journal:  Clin Lab Med       Date:  2006-12       Impact factor: 1.935

Review 5.  Newborn screening: current status.

Authors:  Pamela H Arn
Journal:  Health Aff (Millwood)       Date:  2007 Mar-Apr       Impact factor: 6.301

6.  Metabolic signatures of lung cancer in biofluids: NMR-based metabonomics of urine.

Authors:  Joana Carrola; Cláudia M Rocha; António S Barros; Ana M Gil; Brian J Goodfellow; Isabel M Carreira; João Bernardo; Ana Gomes; Vitor Sousa; Lina Carvalho; Iola F Duarte
Journal:  J Proteome Res       Date:  2010-11-23       Impact factor: 4.466

7.  Early detection of recurrent breast cancer using metabolite profiling.

Authors:  Vincent M Asiago; Leiddy Z Alvarado; Narasimhamurthy Shanaiah; G A Nagana Gowda; Kwadwo Owusu-Sarfo; Robert A Ballas; Daniel Raftery
Journal:  Cancer Res       Date:  2010-10-19       Impact factor: 12.701

8.  Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression.

Authors:  Arun Sreekumar; Laila M Poisson; Thekkelnaycke M Rajendiran; Amjad P Khan; Qi Cao; Jindan Yu; Bharathi Laxman; Rohit Mehra; Robert J Lonigro; Yong Li; Mukesh K Nyati; Aarif Ahsan; Shanker Kalyana-Sundaram; Bo Han; Xuhong Cao; Jaeman Byun; Gilbert S Omenn; Debashis Ghosh; Subramaniam Pennathur; Danny C Alexander; Alvin Berger; Jeffrey R Shuster; John T Wei; Sooryanarayana Varambally; Christopher Beecher; Arul M Chinnaiyan
Journal:  Nature       Date:  2009-02-12       Impact factor: 49.962

9.  An accelerated workflow for untargeted metabolomics using the METLIN database.

Authors:  Ralf Tautenhahn; Kevin Cho; Winnie Uritboonthai; Zhengjiang Zhu; Gary J Patti; Gary Siuzdak
Journal:  Nat Biotechnol       Date:  2012-09       Impact factor: 54.908

10.  Metabolome in progression to Alzheimer's disease.

Authors:  M Orešič; T Hyötyläinen; S-K Herukka; M Sysi-Aho; I Mattila; T Seppänan-Laakso; V Julkunen; P V Gopalacharyulu; M Hallikainen; J Koikkalainen; M Kivipelto; S Helisalmi; J Lötjönen; H Soininen
Journal:  Transl Psychiatry       Date:  2011-12-13       Impact factor: 6.222

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  28 in total

1.  Combining NMR and LC/MS Using Backward Variable Elimination: Metabolomics Analysis of Colorectal Cancer, Polyps, and Healthy Controls.

Authors:  Lingli Deng; Haiwei Gu; Jiangjiang Zhu; G A Nagana Gowda; Danijel Djukovic; E Gabriela Chiorean; Daniel Raftery
Journal:  Anal Chem       Date:  2016-08-01       Impact factor: 6.986

Review 2.  Can NMR solve some significant challenges in metabolomics?

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  J Magn Reson       Date:  2015-08-18       Impact factor: 2.229

3.  NMR-Guided Mass Spectrometry for Absolute Quantitation of Human Blood Metabolites.

Authors:  G A Nagana Gowda; Danijel Djukovic; Lisa Fan Bettcher; Haiwei Gu; Daniel Raftery
Journal:  Anal Chem       Date:  2018-01-09       Impact factor: 6.986

Review 4.  Beyond the paradigm: Combining mass spectrometry and nuclear magnetic resonance for metabolomics.

Authors:  Darrell D Marshall; Robert Powers
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2017-01-11       Impact factor: 9.795

5.  An anti-SARS-CoV-2 metabolite is reduced in diabetes.

Authors:  Júlia Vergara-Alert; Nuria Izquierdo-Useros
Journal:  Nat Metab       Date:  2022-05

Review 6.  Knowledge gaps in late-onset neonatal sepsis in preterm neonates: a roadmap for future research.

Authors:  Swantje Voller; H Rob Taal; Serife Kurul; Kinga Fiebig; Robert B Flint; Irwin K M Reiss; Helmut Küster; Sinno H P Simons
Journal:  Pediatr Res       Date:  2021-09-08       Impact factor: 3.756

7.  Globally Optimized Targeted Mass Spectrometry: Reliable Metabolomics Analysis with Broad Coverage.

Authors:  Haiwei Gu; Ping Zhang; Jiangjiang Zhu; Daniel Raftery
Journal:  Anal Chem       Date:  2015-12-02       Impact factor: 6.986

8.  Visualization, Quantification, and Alignment of Spectral Drift in Population Scale Untargeted Metabolomics Data.

Authors:  Jeramie D Watrous; Mir Henglin; Brian Claggett; Kim A Lehmann; Martin G Larson; Susan Cheng; Mohit Jain
Journal:  Anal Chem       Date:  2017-01-26       Impact factor: 6.986

Review 9.  Metabolomics in chronic pain research.

Authors:  Shweta Teckchandani; G A Nagana Gowda; Daniel Raftery; Michele Curatolo
Journal:  Eur J Pain       Date:  2020-11-05       Impact factor: 3.931

10.  NMR-Based Metabolomics.

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

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